File: seaview_align.sh

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seaview 20021127-4
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#!/bin/sh
arg1=$1
shift 1
args=$*
if [ $# -gt 4 ]; then
	shift 4
	echo used clustalw options: $*
fi
clustalw $args
echo ' '
echo ' '
echo ' '
echo 'Program clustalw terminated.'
echo -n 'Load new alignment? [(y)/n] '
read rep
if [ "$rep" = "n" ]; then
        echo aborted > $arg1.status
else
        echo success > $arg1.status
fi