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Description: fix typos caught by lintian.
Author: Étienne Mollier <emollier@debian.org>
Forwarded: https://github.com/johnlees/seer/pull/79
Last-Update: 2022-11-06
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- seer.orig/src/kmdsCmdLine.cpp
+++ seer/src/kmdsCmdLine.cpp
@@ -38,7 +38,7 @@
("no_filtering", "turn off all filtering and do not output new kmer file")
("max_length", po::value<long int>()->default_value(max_length_default), "maximum kmer length")
("maf", po::value<double>()->default_value(maf_default), "minimum kmer frequency")
- ("min_words", po::value<int>(), "minimum kmer occurences. Overrides --maf");
+ ("min_words", po::value<int>(), "minimum kmer occurrences. Overrides --maf");
po::options_description other("Other options");
other.add_options()
--- seer.orig/src/seerCmdLine.cpp
+++ seer/src/seerCmdLine.cpp
@@ -42,7 +42,7 @@
("no_filtering", "turn off all filtering and perform tests on all kmers input")
("max_length", po::value<long int>()->default_value(max_length_default), "maximum kmer length")
("maf", po::value<double>()->default_value(maf_default), "minimum kmer frequency")
- ("min_words", po::value<int>(), "minimum kmer occurences. Overrides --maf")
+ ("min_words", po::value<int>(), "minimum kmer occurrences. Overrides --maf")
("chisq", po::value<std::string>()->default_value(chisq_default), "p-value threshold for initial chi squared test. Set to 1 to show all")
("pval", po::value<std::string>()->default_value(pval_default), "p-value threshold for final logistic test. Set to 1 to show all");
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