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/*
* segemehl - a read aligner
* Copyright (C) 2008-2017 Steve Hoffmann and Christian Otto
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef _BEDFILES_
#define _BEDFILES_
/*
*
* bedfiles.h
*
*
* @author Steve Hoffmann, steve@bioinf.uni-leipzig.de
* @company Bioinformatics, University of Leipzig
* @date 10/30/16 17:41:47 CET
*
*/
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "stringutils.h"
#include "basic-types.h"
#include "charsequence.h"
#include "gzidx.h"
#include "biofiles.h"
annotationtrack_t* bl_BEDread (void *space, char *filename);
void bl_annotationitemDump(FILE *dev, annotationitem_t *item);
void bl_BEDwrite (annotationitem_t *items, Uint n, FILE *dev);
#endif
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