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/*
* segemehl - a read aligner
* Copyright (C) 2008-2017 Steve Hoffmann and Christian Otto
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef MANOPT_H
#define MANOPT_H
/*
*
* manopt.h
* declarartions for the option manager
*
* @author Steve Hoffmann, steve@bioinf.uni-leipzig.de
* @company Bioinformatics, University of Leipzig
* @date 09/01/2008 11:13:03 AM CEST
*
* Revision of last commit:
* $Rev: 74 $
* $Author: steve $
* $Date: 2008-10-29 15:03:04 +0100 (Wed, 29 Oct 2008) $
*
*
* $Id: manopt.h 74 2008-10-29 14:03:04Z steve $
* $URL: http://www.bioinf.uni-leipzig.de/svn/segemehl/segemehl/branches/esa/trunk/libs/manopt.h $
*
*/
#define MANOPT_MAXSYNOPSIS 10000
typedef enum{
FLAG,
REQSTRINGOPT,
REQCHAROPT,
REQINTOPT,
REQUINTOPT,
REQDBLOPT,
MANOPT_ENUMREQUIRED, /*marker to distinguish required and optional*/
FILEOPT,
STRINGOPT,
CHAROPT,
INTOPT,
UINTOPT,
DBLOPT,
INTRANGEOPT,
UINTRANGEOPT,
DBLRANGEOPT,
LISTOPT,
SELECTOPT,
MANOPT_ENUMSIZE, /*end of enumeration*/
MANOPT_BLOCKSEPARATOR,
TRIPLEINTOPT,
PAIRINTOPT
} manopt_type;
typedef struct {
char *flagname;
int noofvalues;
char **values;
} manopt_arg;
typedef struct {
int noofargs;
manopt_arg* args;
} manopt_argset;
typedef struct {
char shortopt;
char *longopt;
char *argdesc;
char *helpmsg;
char *defaultval;
unsigned char set;
unsigned char required;
manopt_type type;
void *constraint;
manopt_arg arg;
void *reg_var;
} manopt_option;
typedef struct {
char *call;
char *unflagged;
char *references;
char *bugs;
char *version;
char *description;
int noofopts;
manopt_option *opts;
void *mutually_exclusive_opts;
} manopt_optionset;
typedef struct {
int maxlength;
int minlength;
int noofitems;
char** items;
} manopt_listconstraint;
typedef struct {
int max;
int min;
int diff;
} manopt_intconstraint;
typedef struct {
unsigned int max;
unsigned int min;
unsigned int diff;
} manopt_uintconstraint;
typedef struct {
double max;
double min;
double diff;
} manopt_dblconstraint;
int
manopt_parse_commandline(manopt_argset* argset,
int argc,
char **argv);
void
manopt(manopt_optionset* set,
manopt_type type,
unsigned char required,
char shortopt,
char *longopt,
char *helpmsg,
char *argdesc,
void *constraints,
void *reg_var);
manopt_arg*
manopt_getopts(manopt_optionset* set,
int argc,
char **argv);
char*
getNiceSVNVersion(const char *version);
char*
getNiceGitVersion(const char *version, const char *revision, const char *time);
void
manopt_destructarg(manopt_arg *arg);
void
manopt_destructoptionset(manopt_optionset *set);
void
manopt_dumpoptionset(manopt_optionset *set);
void
manopt_helpmsg(manopt_optionset *set);
void
manopt_help(manopt_optionset *set, const char *fmt, ...);
void
manopt_initoptionset(manopt_optionset *set,
char *call, char *unflagged, char *description, char *references, char *version, char *bugs);
manopt_option*
manopt_longopt(manopt_optionset *set, char *longopt);
manopt_option*
manopt_shortopt(manopt_optionset *set, char shortopt);
unsigned char
manopt_isset(manopt_optionset *set, char shortopt, char *longopt);
void
manopt_blockseparator(manopt_optionset *set, char *blockname);
manopt_arg*
manopt_getarg(manopt_optionset *set, char shortopt, char *longopt);
#endif
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