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/*
* segemehl - a read aligner
* Copyright (C) 2008-2017 Steve Hoffmann and Christian Otto
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
/*
*
* nw.h
*
*
* @author Steve Hoffmann, steve@bioinf.uni-leipzig.de
* @company Bioinformatics, University of Leipzig
* @date 11/15/2010 12:52:56 AM CET
*
*/
#include "basic-types.h"
#include "alignment.h"
#include "sw.h"
int*
nwmatrix (void *space, symtype *a, Uint m, symtype *b, Uint n, int indel,
Sint (*sub)(symtype, symtype, void *), void *nfo);
void
nwtraceback (void *space, int *M,
symtype *a, Uint m, symtype *b, Uint n, int indel,
Sint (*sub)(symtype, symtype, void *), void *nfo, Alignment *al);
int*
sgmatrix (void *space, symtype *a, Uint m, symtype *b, Uint n, int indel,
Sint (*sub)(symtype, symtype, void *), void *nfo);
void
sgtraceback (void *space, int *M,
symtype *a, Uint m, symtype *b, Uint n, int indel,
Sint (*sub)(symtype, symtype, void *), void *nfo, Alignment *al);
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