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/*
* segemehl - a read aligner
* Copyright (C) 2008-2017 Steve Hoffmann and Christian Otto
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
/*
* bitArray.c
* implementations
*
* @author Steve Hoffmann
* @email steve@bioinf.uni-leipzig.de
* @date 07/14/2007 04:15:14 PM CEST
*
* SVN
* Revision of last commit: $Rev: 33 $
* Author: $Author: steve $
* Date: $Date: 2008-05-27 10:00:08 +0200 (Tue, 27 May 2008) $
*
* Id: $Id: bitArray.c 33 2008-05-27 08:00:08Z steve $
* Url: $URL: file:///homes/bierdepot/steve/svn/segemehl/trunk/libs/bitArray.c $
*
*/
#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include "basic-types.h"
#include "memory.h"
#include "bitArray.h"
bitarray
initbitarray(void *space, Uint len) {
Uint n;
bitarray a;
n = len/8;
n += (len % 8 > 0) ? 1 : 0;
fprintf(stderr, "init bit array of %u\n", n);
a = ALLOCMEMORY(space, NULL, unsigned char, n);
return a;
}
bitarray
resizebitarray(void *space, bitarray a, Uint len) {
Uint n;
n = len/8;
n += (len % 8 > 0) ? 1 : 0;
a = ALLOCMEMORY(space, a, unsigned char, n);
return a;
}
void
setbitarray(bitarray a, Uint len, unsigned char val) {
Uint n;
n = len/8;
n += (len % 8 > 0) ? 1 : 0;
memset(a,((val) ? 255 :0), n);
}
unsigned char
valbitarray(bitarray a, Uint len, unsigned char val) {
Uint i;
char *array;
array = (char*) a;
for(i=0; i < (len/8); i++) {
if (array[i] != (char) 255)
return 0;
}
for(i=0; i < (len%8); i++){
if (getbit(a, len-i-1)!= val)
return 0;
}
return 1;
}
void
dumpbitarray(bitarray a, Uint len) {
Uint i;
for(i=0; i < len; i++) {
printf("%d ", getbit(a, i));
}
printf("\n");
}
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