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Source: sepp
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Pierre Gruet <pgt@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
python3,
python3-setuptools,
python3-dendropy,
ant,
libjenkins-json-java,
libgoogle-gson-java,
ncbi-blast+ <!nocheck>,
pplacer <!nocheck>,
hmmer <!nocheck>
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/sepp
Vcs-Git: https://salsa.debian.org/med-team/sepp.git
Homepage: https://github.com/smirarab/sepp/
Rules-Requires-Root: no
Package: sepp
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
default-jre,
hmmer,
pplacer,
libjenkins-json-java,
libgoogle-gson-java,
libjson-java,
ncbi-blast+
Description: phylogeny with ensembles of Hidden Markov Models
The tool SEPP implementing these methods uses ensembles of Hidden Markov
Models (HMMs) in different ways, each focusing on a different problem.
.
SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the
problem of phylogenetic placement of short reads into reference
alignments and trees.
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