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#!/bin/bash
set -e
pkg=seq-gen
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
echo 'Test 1'
seq-gen -mHKY -t3.0 -f0.3,0.2,0.2,0.3 -l40 -n3 < example.tree > test1.dat
echo 'Test 2'
seq-gen -mHKY -p5 -n5 -d0.3 < heterogeneity.tree > test2.dat
echo 'Test 3'
seq-gen -mHKY -g3 -a0.1 < recombinant.tree > test3.dat
echo 'Test 4'
seq-gen -mHKY -l3 -n5 -z190000 -d0.4 < seqs+trees.phy > test4.dat
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