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# 2.0.0
## Features
* The index additionally stores the original file paths, window size, k-mer size, number of parts, and the data layout
([\#34](https://github.com/seqan/raptor/pull/34), [\#47](https://github.com/seqan/raptor/pull/47),
[\#57](https://github.com/seqan/raptor/pull/57), [\#58](https://github.com/seqan/raptor/pull/58)):
* `--window`, `--kmer`, `--parts`, and `--compressed` are no longer supported when running `raptor search`.
* Indices built with an older version of raptor cannot be used with version 2.0.0.
* Old indices can be converted by running `raptor upgrade`.
* New output format ([\#47](https://github.com/seqan/raptor/pull/47)):
* Output includes a header (lines starting with '\#').
* The header assigns an integer to each input file, which are then used in the results:
```
#0 /dev/shm/test/data/bin1.fa
#1 /dev/shm/test/data/bin2.fa
#2 /dev/shm/test/data/bin3.fa
#3 /dev/shm/test/data/bin4.fa
#QUERY_NAME USER_BINS
query1 0
query2 0,1
query3 2,3
```
* The list of bins does no longer contain a trailing comma
(the last line would have looked like this before 2.0.0: `query3 2,3,`).
* Added support for some parts of the [SOCKS Interface](https://gitlab.ub.uni-bielefeld.de/gi/socks)
([\#35](https://github.com/seqan/raptor/pull/35)).
## Misc
* Passing a list of bins is no longer supported. Use a file containing paths to the files instead
([\#35](https://github.com/seqan/raptor/pull/35)).
## Bug fixes
Except the last entry in this list, these bugs are expected to not be present in version 1.1.0.
* Validation error when using `--compute-minimiser` ([\#25](https://github.com/seqan/raptor/pull/25)).
* Typos/Errors in `util` scripts ([\#32](https://github.com/seqan/raptor/pull/32),
[\#39](https://github.com/seqan/raptor/pull/39), [\#40](https://github.com/seqan/raptor/pull/40),
[\#48](https://github.com/seqan/raptor/pull/48), [\#51](https://github.com/seqan/raptor/pull/51)).
* Partitioned IBF not working ([\#50](https://github.com/seqan/raptor/pull/50),
[\#53](https://github.com/seqan/raptor/pull/53)).
* Rare segmentation fault in threshold computation ([\#54](https://github.com/seqan/raptor/pull/54)).
# 1.1.0
## Features
* Raptor accepts a text file containing the path to a bin on each line
([\#16](https://github.com/seqan/raptor/pull/16)).
## Bug fixes
* Threshold option not working ([\#14](https://github.com/seqan/raptor/pull/14)).
# 1.0.1
## Bug fixes
* Reduced the number of open file handles ([\#10](https://github.com/seqan/raptor/pull/10)).
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