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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2013, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
#include <seqan/file.h>
#include <seqan/modifier.h>
#include <seqan/sequence.h>
#include "test_modifier_alphabet.h"
#include "test_modifier_functors.h"
#include "test_modifier_shortcuts.h"
#include "test_modifier_string.h"
#include "test_modifier_view.h"
SEQAN_BEGIN_TESTSUITE(test_modifier)
{
// Test the modifier shortcuts.
SEQAN_CALL_TEST(test_modifer_shortcuts_dna_string_reverse);
SEQAN_CALL_TEST(test_modifer_shortcuts_dna5_string_reverse);
SEQAN_CALL_TEST(test_modifer_shortcuts_rna_string_reverse);
SEQAN_CALL_TEST(test_modifer_shortcuts_rna5_string_reverse);
SEQAN_CALL_TEST(test_modifer_shortcuts_dna_string_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_dna5_string_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_rna_string_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_rna5_string_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_dna_string_reverse_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_dna5_string_reverse_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_rna_string_reverse_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_rna5_string_reverse_complement);
SEQAN_CALL_TEST(test_modifer_shortcuts_complement_in_place_string);
SEQAN_CALL_TEST(test_modifer_shortcuts_complement_in_place_string_set);
SEQAN_CALL_TEST(test_modifer_shortcuts_reverse_complement_in_place_string);
SEQAN_CALL_TEST(test_modifer_shortcuts_reverse_complement_in_place_string_set);
SEQAN_CALL_TEST(test_modifer_shortcuts_reverse_in_place_string);
SEQAN_CALL_TEST(test_modifer_shortcuts_reverse_in_place_string_set);
SEQAN_CALL_TEST(test_modifer_shortcuts_to_lower_in_place_string);
SEQAN_CALL_TEST(test_modifer_shortcuts_to_lower_in_place_string_set);
SEQAN_CALL_TEST(test_modifer_shortcuts_to_upper_in_place_string);
SEQAN_CALL_TEST(test_modifer_shortcuts_to_upper_in_place_string_set);
// Test modifier functors.
SEQAN_CALL_TEST(test_modifier_functors_functor_upcase);
SEQAN_CALL_TEST(test_modifier_functors_functor_lowcase);
SEQAN_CALL_TEST(test_modifier_functors_dna_complement);
// Test modified alphabet.
SEQAN_CALL_TEST(test_modifier_alphabet_size_metafunctions);
SEQAN_CALL_TEST(test_modifier_DnaQ);
SEQAN_CALL_TEST(test_modifier_alphabet_enumerate);
SEQAN_CALL_TEST(test_modifier_alphabet_convert);
SEQAN_CALL_TEST(test_modifier_alphabet_ord_value);
/*
SEQAN_CALL_TEST(test_modifier_alphabet_operator_eq);
SEQAN_CALL_TEST(test_modifier_alphabet_operator_neq);
SEQAN_CALL_TEST(test_modifier_alphabet_operator_lt);
SEQAN_CALL_TEST(test_modifier_alphabet_operator_gt);
SEQAN_CALL_TEST(test_modifier_alphabet_operator_leq);
SEQAN_CALL_TEST(test_modifier_alphabet_operator_geq);
*/
// Test modifier view string.
SEQAN_CALL_TEST(test_modifier_view_iterator_metafunctions);
SEQAN_CALL_TEST(test_modifier_view_iterator_metafunctions);
SEQAN_CALL_TEST(test_modifier_view_iterator);
// SEQAN_CALL_TEST(test_modifier_view_const_iterator);
SEQAN_CALL_TEST(test_modifier_view_string_caesar_chiffre);
SEQAN_CALL_TEST(test_modifier_view_string_upper_case);
SEQAN_CALL_TEST(test_modifier_view_string_low_case);
SEQAN_CALL_TEST(test_modifier_view_string_alphabet_conversion);
SEQAN_CALL_TEST(test_modifier_view_string_nested_modifier);
SEQAN_CALL_TEST(test_modifier_convert_in_place);
// Test modified string and iterator in some configurations.
SEQAN_CALL_TEST(test_modifier_modified_string_metafunctions);
SEQAN_CALL_TEST(test_modifier_modified_string_construct);
SEQAN_CALL_TEST(test_modifier_modified_string_assignment);
SEQAN_CALL_TEST(test_modifier_modified_string_length);
SEQAN_CALL_TEST(test_modifier_modified_string_cascade);
// TODO(holtgrew): SEQAN_CALL_TEST(test_modifier_modified_iterator_metafunctions);
SEQAN_CALL_TEST(test_modifier_modified_iterator_construct);
SEQAN_CALL_TEST(test_modifier_modified_string_mod_view);
SEQAN_CALL_TEST(test_modifier_modified_string_mod_view_segment);
SEQAN_CALL_TEST(test_modifier_modified_string_reverse_segment);
SEQAN_CALL_TEST(test_modifier_minimal);
}
SEQAN_END_TESTSUITE
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