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#include <seqan/bed_io.h>
using namespace seqan;
int main()
{
// Open input bed file.
BedFileIn bedIn;
if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))))
{
std::cerr << "ERROR: Could not open example.bed" << std::endl;
return 1;
}
// Attach to standard output.
BedFileOut bedOut(std::cout, Bed());
// Read the file record by record.
BedRecord<Bed3> record;
try
{
while (!atEnd(bedIn))
{
readRecord(record, bedIn);
writeRecord(bedOut, record);
}
}
catch (Exception const & e)
{
std::cout << "ERROR: " << e.what() << std::endl;
return 1;
}
return 0;
}
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