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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
// Copyright (c) 2013 NVIDIA Corporation
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Andreas Gogol-Döring <andreas.doering@mdc-berlin.de>
// ==========================================================================
// Definition of basic Metafunctions.
// ==========================================================================
// TODO(holtgrew): Rename to "shared metafunctions.h"?
// TODO(holtgrew): This could use some cleanup.
#ifndef SEQAN_BASIC_BASIC_TYPE_H_
#define SEQAN_BASIC_BASIC_TYPE_H_
#include <cstddef>
namespace seqan {
//////////////////////////////////////////////////////////////////////////////
// TODO(holtgrew): Remove default implementation.
// SEQREV: elements-are-containers should not have a default implementation
template <typename T, const int i>
struct Value
{
typedef T Type;
};
template <typename T>
struct Value<T const>
{
typedef T const Type;
};
//____________________________________________________________________________
// TODO(holtgrew): Remove default implementation.
template <typename T>
struct GetValue
{
typedef typename Value<T>::Type const & Type;
};
template <typename T>
struct GetValue<T const>:
public GetValue<T>
{
};
//____________________________________________________________________________
// TODO(holtgrew): Remove default implementation.
template <typename T>
struct Reference
{
typedef typename Value<T>::Type & Type;
};
template <typename T>
struct Reference<T const>
{
typedef typename Value<T>::Type const & Type;
};
//____________________________________________________________________________
// TODO(holtgrew): Remove default implementation.
template <typename T>
struct Size
{
typedef size_t Type;
};
template <typename T>
struct Size<T const>:
Size<T>
{
};
//____________________________________________________________________________
// TODO(holtgrew): Remove default implementation.
template <typename T>
struct Difference
{
typedef ptrdiff_t Type;
};
template <typename T>
struct Difference<T const>:
Difference<T>
{
};
//____________________________________________________________________________
// TODO(holtgrew): Remove default implementation.
template <typename T>
struct Position
{
typedef typename Size<T>::Type Type;
};
template <typename T>
struct Position<T const>:
Position<T>
{
};
//____________________________________________________________________________
// SEQREV: elements-are-containers should not have a default implementation, if a type has no host, do not return self
template <typename T>
struct Host
{
typedef T Type;
};
//____________________________________________________________________________
//____________________________________________________________________________
/*!
* @mfn Cargo
* @headerfile <seqan/basic.h>
* @brief Type of additional data stored in an object.
*
* @signature Cargo<T>::Type;
*
* @tparam T Type for which the cargo tpye is queried.
*
* @return Type The cargo type of <tt>T</tt>.
*
* The definition of Cargo allows the addition of user-specified data into existing data structures.
*/
// TODO(holtgrew): Should this have a default implementation?
template <typename T>
struct Cargo {
typedef Nothing Type;
};
template <typename T>
struct Cargo<T const> {
typedef typename Cargo<T>::Type const Type;
};
//____________________________________________________________________________
/*!
* @mfn VertexDescriptor
* @headerfile <seqan/basic.h>
* @brief Type of an object that represents a vertex descriptor.
*
* @signature VertexDescriptor<T>::Type;
*
* @tparam T The graph type to query.
*
* @return Type The resulting vertex descriptor type.
*/
// TODO(holtgrew): Should this have a default implementation? For all graphs -- OK but for all types?
template <typename T>
struct VertexDescriptor {
typedef void* Type;
};
template <typename T>
struct VertexDescriptor<T const>:
public VertexDescriptor<T> {};
//____________________________________________________________________________
/*!
* @mfn Id
* @headerfile <seqan/basic.h>
* @brief Type of an object that represents an id.
*
* @signature Id<T>::Type
*
* @tparam T The type to query for its id type.
*
* @return Type The resulting identifier type.
*/
// TODO(holtgrew): Should this have a default implementation?
template<typename T>
struct Id {
typedef unsigned int Type;
};
template<typename T>
struct Id<T const> : Id<T> {};
//____________________________________________________________________________
/*!
* @mfn Key
* @headerfile <seqan/basic.h>
* @brief Key type of a key to cargo mapping.
*
* @signature Key<T>::Type;
*
* @tparam T Type for which a key type is determined.
*
* @return Type The key type.
*/
// TODO(holtgrew): Should this have a default implementation?
template< typename T >
struct Key
{
typedef T Type;
};
template <typename T>
struct Key<T const>:
Key<T> {};
//____________________________________________________________________________
template<typename T>
struct Object;
template <typename T>
struct Object<T const>:
Object<T> {};
//____________________________________________________________________________
// TODO(holtgrew): Move to alignments?
// TODO(holtgrew): Is this default implementation what we want?
template < typename TSpec = void >
struct Source
{
typedef TSpec Type;
};
template <typename T>
struct Source<T const>:
Source<T>
{
};
//____________________________________________________________________________
/*!
* @mfn IsLightWeight
* @headerfile <seqan/basic.h>
* @brief Determines whether an object can efficiently be passed by copy.
*
* @signature IsLightWeight<T>::Type;
*
* @tparam T The type to query.
*
* @return Type Either True or False. True if the object can efficiently be copied.
*/
template <typename T>
struct IsLightWeight:
False {};
//____________________________________________________________________________
// TODO(holtgrew): Really required?
template <typename T>
struct Parameter_
{
typedef T & Type;
};
template <typename T>
struct Parameter_<T const>
{
typedef T const & Type;
};
template <typename T>
struct Parameter_<T *>
{
typedef T * Type;
};
template <typename T>
struct Parameter_<T const *>
{
typedef T const * Type;
};
template <typename T, size_t I>
struct Parameter_<T [I]>
{
typedef T * Type;
};
template <typename T, size_t I>
struct Parameter_<T const [I]>
{
typedef T const * Type;
};
// TODO(holtgrew): Really required?
template <typename T>
typename Parameter_<T>::Type
inline _toParameter(T * _object)
{
return * _object;
}
template <typename T>
typename Parameter_<T>::Type
inline _toParameter(T & _object)
{
return _object;
}
template <typename T>
typename Parameter_<T const>::Type
inline _toParameter(T const & _object)
{
return _object;
}
//____________________________________________________________________________
/*!
* @mfn Member
* @headerfile <seqan/basic.h>
* @brief Type of a member of an object.
*
* @signature Member<TObject, TSpec>::Type;
* @tparam TObject The object holding the member.
* @tparam TSpec A tag to identify the object's member.
* @return Type The resulting object's member type.
*
* This metafunction is used to control the type of a member of a given object. It works analogously to @link Fibre @endlink.
* For instance, it is used to change the relationship between two objects from aggregation to composition and vice versa.
*
* @see Fibre
*/
template <typename TObject, typename TSpec>
struct Member;
template <typename TObject, typename TSpec>
struct Member<TObject const, TSpec> :
Member<TObject, TSpec> {};
//____________________________________________________________________________
// TODO(holtgrew): Really required?
template <typename T>
struct Pointer_
{
typedef T * Type;
};
template <typename T>
struct Pointer_<T *>
{
typedef T * Type;
};
template <typename T>
struct Pointer_<T * const>
{
typedef T * Type;
};
template <typename T, size_t I>
struct Pointer_<T [I]>
{
typedef T * Type;
};
//non const version of Pointer_ for return values
template <typename T>
struct NonConstPointer_:
Pointer_<T>
{
};
template <typename T>
struct NonConstPointer_<T * const>
{
typedef T * Type;
};
// TODO(holtgrew): Really required?
template <typename T>
inline typename NonConstPointer_<T>::Type
_toPointer(T & _object)
{
return & _object;
}
template <typename T>
inline typename NonConstPointer_<T const>::Type
_toPointer(T const & _object)
{
return & _object;
}
template <typename T>
inline typename NonConstPointer_<T *>::Type
_toPointer(T * _object)
{
return _object;
}
// --------------------------------------------------------------------------
// Function _referenceCast()
// --------------------------------------------------------------------------
// explicitly give desired dereferenced type as first argument,
// e.g. _dereference<int>(int*) or _dereference<Segment<..> &>(Segment<..> &)
template <typename T>
inline T
_referenceCast(typename RemoveReference<T>::Type & ptr)
{
return ptr;
}
template <typename T>
inline SEQAN_FUNC_DISABLE_IF(IsSameType<T, typename RemoveReference<T>::Type>, T)
_referenceCast(typename RemoveReference<T>::Type * ptr)
{
return *ptr;
}
template <typename T>
inline SEQAN_FUNC_DISABLE_IF(IsSameType<T, typename RemovePointer<T>::Type>, T)
_referenceCast(typename RemovePointer<T>::Type & ptr)
{
return &ptr;
}
//____________________________________________________________________________
/*!
* @mfn LENGTH
* @brief Number of elements in a fixed-size container/vector.
*
* @signature LENGTH<T>::VALUE;
*
* @tparam T The type to query for its length.
*
* @return VALUE The length of <tt>T</tt>.
*/
// SEQREV: elements-are-containers should probably not have a default implementation
// TODO(holtgrew): Rather switch to static const unsigned VALUE = ?
template <typename T>
struct LENGTH
{
enum { VALUE = 1 };
};
template <typename T>
struct LENGTH<T const>:
LENGTH<T>
{
};
/*!
* @mfn WEIGHT
* @brief Number of relevant positions in a shape.
*
* @signature WEIGHT<T>::VALUE;
*
* @tparam T The Shape type to query.
* @return VALUE The number of relevant positions in a shape.
*/
// TODO(holtgrew): Should probably go to wherever shapes are defined.
template <typename T>
struct WEIGHT:
LENGTH<T>
{
};
template <typename T>
struct WEIGHT<T const>:
WEIGHT<T>
{
};
//////////////////////////////////////////////////////////////////////////////
//Iterator: see basic_iterator.h
//////////////////////////////////////////////////////////////////////////////
} // namespace seqan
#endif // #ifndef SEQAN_BASIC_BASIC_TYPE_H_
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