1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
|
// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: David Weese <david.weese@fu-berlin.de>
// ==========================================================================
// Packed triple specialization.
// ==========================================================================
#ifndef SEQAN_INCLUDE_SEQAN_TRIPLE_PACKED_H_
#define SEQAN_INCLUDE_SEQAN_TRIPLE_PACKED_H_
namespace seqan {
// ============================================================================
// Forwards
// ============================================================================
// ============================================================================
// Tags, Classes, Enums
// ============================================================================
/*!
* @class PackedTriple
* @headerfile <seqan/basic.h>
* @extends Triple
* @brief Disable memory alignment to store memory.
*
* @signature template <typename T1, typename T2, typename T3>
* class Triple<T1, T2, T3, Pack>;
*
* @tparam T1 The first type of the Triple.
* @tparam T2 The second type of the Triple.
* @tparam T3 The third type of the Triple.
*/
#pragma pack(push,1)
template <typename T1, typename T2, typename T3>
struct Triple<T1, T2, T3, Pack>
{
// -----------------------------------------------------------------------
// Members
// -----------------------------------------------------------------------
T1 i1;
T2 i2;
T3 i3;
// -----------------------------------------------------------------------
// Constructors
// -----------------------------------------------------------------------
inline Triple() : i1(T1()), i2(T2()), i3(T3()) {}
inline Triple(Triple const &_p)
: i1(_p.i1), i2(_p.i2), i3(_p.i3) {}
inline Triple(T1 const &_i1, T2 const &_i2, T3 const &_i3)
: i1(_i1), i2(_i2), i3(_i3) {}
template <typename T1_, typename T2_, typename T3_, typename TSpec__>
inline Triple(Triple<T1_, T2_, T3_, TSpec__> const & _p)
: i1(getValueI1(_p)), i2(getValueI2(_p)), i3(getValueI3(_p)) {}
};
#pragma pack(pop)
// ============================================================================
// Metafunctions
// ============================================================================
template <typename T1, typename T2, typename T3, typename TSpec>
struct MakePacked< Triple<T1, T2, T3, TSpec> >
{
typedef Triple<T1, T2, T3, Pack> Type;
};
// ============================================================================
// Functions
// ============================================================================
// ----------------------------------------------------------------------------
// Function set().
// ----------------------------------------------------------------------------
// References to members to packed structs do not work. Always copy.
template <typename T1, typename T2, typename T3, typename T>
inline void
set(Triple<T1, T2, T3, Pack> & t1, Triple<T1, T2, T3, Pack> & t2)
{
t1 = t2;
}
// ----------------------------------------------------------------------------
// Function move().
// ----------------------------------------------------------------------------
// References to members to packed structs do not work. Always copy.
template <typename T1, typename T2, typename T3, typename T>
inline void
move(Triple<T1, T2, T3, Pack> & t1, Triple<T1, T2, T3, Pack> & t2)
{
t1 = t2;
}
// -----------------------------------------------------------------------
// Function setValueIX()
// -----------------------------------------------------------------------
// References to members to packed structs do not work. Always copy.
template <typename T1, typename T2, typename T3, typename T>
inline void setValueI1(Triple<T1, T2, T3, Pack> & triple, T const & _i)
{
triple.i1 = _i;
}
template <typename T1, typename T2, typename T3, typename T>
inline void setValueI2(Triple<T1, T2, T3, Pack> & triple, T const & _i)
{
triple.i2 = _i;
}
template <typename T1, typename T2, typename T3, typename T>
inline void setValueI3(Triple<T1, T2, T3, Pack> & triple, T const & _i)
{
triple.i3 = _i;
}
// -----------------------------------------------------------------------
// Function moveValueIX()
// -----------------------------------------------------------------------
// References to members to packed structs do not work. Always copy.
template <typename T1, typename T2, typename T3, typename T>
inline void moveValueI1(Triple<T1, T2, T3, Pack> & triple, T const & _i)
{
triple.i1 = _i;
}
template <typename T1, typename T2, typename T3, typename T>
inline void moveValueI2(Triple<T1, T2, T3, Pack> & triple, T const & _i)
{
triple.i2 = _i;
}
template <typename T1, typename T2, typename T3, typename T>
inline void moveValueI3(Triple<T1, T2, T3, Pack> & triple, T const & _i)
{
triple.i3 = _i;
}
} // namespace seqan
#endif // #ifndef SEQAN_INCLUDE_SEQAN_TRIPLE_PACKED_H_
|
