File: parallel.h

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// ==========================================================================
//                 SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
//     * Redistributions of source code must retain the above copyright
//       notice, this list of conditions and the following disclaimer.
//     * Redistributions in binary form must reproduce the above copyright
//       notice, this list of conditions and the following disclaimer in the
//       documentation and/or other materials provided with the distribution.
//     * Neither the name of Knut Reinert or the FU Berlin nor the names of
//       its contributors may be used to endorse or promote products derived
//       from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
// ==========================================================================
// Umbrella header for the parallel module.
// ==========================================================================

#ifndef SEQAN_PARALLEL_H_
#define SEQAN_PARALLEL_H_

// ============================================================================
// Prerequisites
// ============================================================================

#include <seqan/platform.h>
#include <seqan/basic.h>
#include <seqan/sequence.h>

// ----------------------------------------------------------------------------
// STL
// ----------------------------------------------------------------------------
// Use MCSTL which is part of the GCC since version 4.3

#if defined(_OPENMP) && defined(STDLIB_GNU)
#include <parallel/algorithm>
#include <parallel/numeric>
#else
#include <algorithm>
#include <numeric>
#endif // COMPILER_GCC

#include <atomic>
#include <thread>
#include <future>
#include <mutex>
#include <condition_variable>
#include <unordered_map>
#include <shared_mutex>

// ============================================================================
// Module Headers
// ============================================================================

// Misc.
#include <seqan/parallel/parallel_tags.h>
#include <seqan/parallel/parallel_macros.h>

// Atomic operations.
#include <seqan/parallel/parallel_atomic_primitives.h>
#include <seqan/parallel/parallel_atomic_misc.h>
#include <seqan/parallel/parallel_lock.h>

// Splitting.
#include <seqan/parallel/parallel_splitting.h>

// Parallel variants of basic algorithms
#include <seqan/parallel/parallel_algorithms.h>

// Thread-safe / lock-free container operations.
#include <seqan/parallel/parallel_sequence.h>
#include <seqan/parallel/parallel_queue.h>
#include <seqan/parallel/parallel_queue_suspendable.h>
#include <seqan/parallel/parallel_resource_pool.h>
#include <seqan/parallel/parallel_serializer.h>
#include <seqan/parallel/enumerable_thread_local.h>
#include <seqan/parallel/enumerable_thread_local_iterator.h>
#include <seqan/parallel/parallel_thread_pool.h>


#endif  // SEQAN_PARALLEL_H_