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gaps AB--CD-EFG-HIJ
seq ABCDEFGHIJ
beginPosition(gaps) == 0
endPosition(gaps) == 10
clippedBeginPosition(gaps) == 0
clippedEndPosition(gaps) == 14
gaps -CD-EFG
seq CDEFG
beginPosition(gaps) == 2
endPosition(gaps) == 7
clippedBeginPosition(gaps) == 3
clippedEndPosition(gaps) == 10
4 view position => 4 source position
2 source position => 1 view position
3 clipped gapped => 6 unclipped gapped
6 unclipped gapped => 2 clipped gapped
3 clipped ungapped => 5 unclipped ungapped
5 unclipped ungapped => 3 clipped ungapped
3 clipped gapped => 2 clipped ungapped
4 unclipped ungapped => 7 unclipped gapped
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