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##fileformat=VCFv4.1
##source=GUSTAF
##reference=adeno.fa
##reads=adeno_modified_reads.fa
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record (for DUP last position of duplicated sequence)">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=EVENT,Number=1,Type=String,Description="Event identifier for breakends.">
##INFO=<ID=TARGETPOS,Number=1,Type=String,Description="Target position for duplications (position before inserted sequence).">
##INFO=<ID=BM,Number=1,Type=Integer,Description="Breakpoint Mate: similar breakpoints have same ID">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Number of Supporting Reads/Read Depth for Variant">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DUP:TANDEM,Description="Tandem Duplication">
##contig=<ID=gi|9632547|ref|NC_002077.1|,length=4718>
##contig=<ID=gi|1234567|,length=1148>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT
gi|9632547|ref|NC_002077.1| 210 . G <INV> . PASS SVTYPE=INV;END=280;SVLEN=70;BM=5;DP=1 . 1
gi|9632547|ref|NC_002077.1| 420 . G <DEL> . PASS SVTYPE=DEL;END=490;SVLEN=-70;BM=0;DP=1 . 1
gi|9632547|ref|NC_002077.1| 909 . A <INS> . PASS SVTYPE=INS;SVLEN=70;BM=1;DP=1 . 1
gi|9632547|ref|NC_002077.1| 1193 . C <DEL> . PASS SVTYPE=DEL;END=1262;SVLEN=-69;BM=2;DP=1 . 1
gi|9632547|ref|NC_002077.1| 1468 BND_4_1 G G[gi|9632547|ref|NC_002077.1|:1821[ . PASS SVTYPE=BND;EVENT=Trans4;BM=3;DP=3 . 1
gi|9632547|ref|NC_002077.1| 1469 BND_4_2 G ]gi|9632547|ref|NC_002077.1|:1888]G . PASS SVTYPE=BND;EVENT=Trans4;BM=3;DP=3 . 1
gi|9632547|ref|NC_002077.1| 1820 BND_4_3 G G[gi|9632547|ref|NC_002077.1|:1889[ . PASS SVTYPE=BND;EVENT=Trans4;BM=3;DP=3 . 1
gi|9632547|ref|NC_002077.1| 1821 BND_4_4 C ]gi|9632547|ref|NC_002077.1|:1468]C . PASS SVTYPE=BND;EVENT=Trans4;BM=3;DP=3 . 1
gi|9632547|ref|NC_002077.1| 1888 BND_4_5 A A[gi|9632547|ref|NC_002077.1|:1469[ . PASS SVTYPE=BND;EVENT=Trans4;BM=3;DP=3 . 1
gi|9632547|ref|NC_002077.1| 1889 BND_4_6 G [gi|9632547|ref|NC_002077.1|:1820[G . PASS SVTYPE=BND;EVENT=Trans4;BM=3;DP=3 . 1
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