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MASON VARIANT MATERIALIZER
==========================
__OPTIONS____________________________________________________________________
MASON MATERIALIZER OPTIONS
--------------------------
VERBOSITY NORMAL
SEED 0
METHYLATION SEED 0
OUTPUT FILE materializer.random_var2.fasta
BREAKPOINT TSV OUT
METHYLATION LEVEL INPUT random_meth1.fasta
METHYLATION LEVEL OUTPUT materializer.random_meth2.fasta
HAPLOTYPE NAME SEP /
MATERIALIZER OPTIONS
VERBOSITY NORMAL
REFERENCE FASTA random.fasta
VARIANTS VCF random_var2.vcf
METHYLATION LEVELS OPTIONS
VERBOSITY NORMAL
ENABLED YES
MEDIAN CG 0.6
STDDEV CG 0.03
MEDIAN CHG 0.08
STDDEV CHG 0.008
MEDIAN CHH 0.05
STDDEV CHH 0.005
__INITIALIZATION_____________________________________________________________
Opening files... OK
__MATERIALIZING______________________________________________________________
Materializing... 1/1 1/2 2/1 2/2 DONE
Done materializing VCF file.
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