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MASON SIMULATOR
===============
____INITIALIZING______________________________________________________________
Opening reference and variants file ... OK
Initializing fragment-to-contig distribution ... OK
Initializing simulation threads ... OK
Opening output file simulator.left2.fq ... OK
Opening output file simulator.right2.fq ... OK
Opening output file simulator.out2.sam... OK
____READ SIMULATION___________________________________________________________
Distributing fragments to 2 contigs (2 haplotypes each) ... OK
Simulating Reads:
1 (allele 1) .. (435 fragments) OK
1 (allele 2) .. (467 fragments) OK
2 (allele 1) .. (54 fragments) OK
2 (allele 2) .. (44 fragments) OK
Done simulating reads.
Joining temporary files ... OK
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