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/*==========================================================================
RazerS - Fast Read Mapping with Controlled Loss Rate
http://www.seqan.de/projects/razers.html
============================================================================
Copyright (C) 2008 by David Weese
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your options) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
==========================================================================
Data tables with precomputed parameters. Generated from gapped_params
folder.
==========================================================================*/
#ifndef APPS_RAZERS_PARAM_TABS_H_
#define APPS_RAZERS_PARAM_TABS_H_
// NOTE: DDDoc style comments are used here but not activated on purpose. Only there for RazerS developers.
#include <seqan/sequence.h>
struct GappedParamsRecord
{
// Length of the read, "N??" in gapped_params file name.
unsigned readLength;
// Distance type, "H" or "L" in gapped_params file name.
char type;
// Number of errors, first column in gapped params file.
unsigned errors;
// Shape, second column in gapped params file.
char const * shape;
// Threshold, third column in gapped params file.
unsigned t;
// Loss rate, fourth column in gapped params file.
double lossRate;
// Potential match count on simulated data from which the parameters were
// computed.
unsigned measure;
};
bool getGappedParamsRecords(seqan::String<GappedParamsRecord> & records,
unsigned n,
char errorModel);
#endif // #ifndef APPS_RAZERS_PARAM_TABS_H_
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