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Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Description: Update paths to their Debian equivalents
--- seqan2.orig/apps/ngs_roi/README
+++ seqan2/apps/ngs_roi/README
@@ -29,7 +29,8 @@
------------------------------------------------------------------------------
You can find the binaries bam2roi, roi_feature_projection, and
-roi_plot_thumbnails in the directory "bin" and the example files in "example".
+roi_plot_thumbnails in the directory /usr/lib/seqan/bin/ and the example files
+in /usr/share/doc/seqan-apps/ngs_roi/example/.
The following examples require a Unix environment such as Linux or Mac Os X.
@@ -97,7 +98,7 @@
The ROI file and the BED file have be sorted by coordinate (lexicographically
reference names, then by begin and end position). You will find the script
-sort_bed.sh in the subdirectory bin. We first use it to sort the BED file
+bed_sort.sh in /usr/lib/seqan/bin/. We first use it to sort the BED file
appropriately.
$ head -5 dmel.bed
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