File: compute_alignment_stats.cpp.stdout

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seqan2 2.4.0%2Bdfsg-16
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file content (52 lines) | stat: -rw-r--r-- 1,739 bytes parent folder | download | duplicates (8)
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      0     .    :    .    :    .    :    .    :    .    : 
        MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHL
        | |   |       | |        | | | |||  || |   |  |   
        MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF---

     50     .    :    .    :    .    :    .    :    .    : 
        KSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI
           |    |  |  ||  |  | |   |           |   ||     
        ---DLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRV

    100     .    :    .    :    .    :    .    :    .    
        PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYK
                | |    |    | || | |  |  | |    |     | 
        DPVNFKLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVTEK-----YR


score:               159
gap opens:           2
gap extensions:      9
num insertions:      11
num deletions:       0
num matches:         41
num mismatches:      96
num positive scores: 69
num negative scores: 68
percent similarity:  46.6216
percent identity:    27.7027


Clipping alignment to (5, 100)
      0     .    :    .    :    .    :    .    :    .    : 
        GEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDE
         |       | |        | | | |||  || |   |  |      | 
        TERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DL

     50     .    :    .    :    .    :    .    :    . 
        MKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI
           |  |  ||  |  | |   |           |   ||     
        HPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRV


score:               99
gap opens:           1
gap extensions:      5
num insertions:      6
num deletions:       0
num matches:         26
num mismatches:      63
num positive scores: 43
num negative scores: 46
percent similarity:  45.2632
percent identity:    27.3684