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//![main]
#include <iostream>
#include <seqan/align.h>
using namespace seqan;
int main()
{
typedef String<char> TSequence;
TSequence text = "MISSISSIPPIANDMISSOURI";
TSequence pattern = "SISSI";
String<int> locations;
for (unsigned i = 0; i < length(text) - length(pattern); ++i)
{
// Compute the MyersBitVector in current window of text.
TSequence tmp = infix(text, i, i + length(pattern));
// Report hits with at most 2 errors.
if (globalAlignmentScore(tmp, pattern, MyersBitVector()) >= -2)
{
appendValue(locations, i);
}
}
return 0;
}
//![main]
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