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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: David Weese <david.weese@fu-berlin.de>
// ==========================================================================
// Thread-safe suspenable queue
// ==========================================================================
// This queue suspends the caller if it pops a value when the queue was empty
// or appends a value to a full fixed-size queue.
#ifndef SEQAN_PARALLEL_PARALLEL_QUEUE_SUSPENDABLE_H_
#define SEQAN_PARALLEL_PARALLEL_QUEUE_SUSPENDABLE_H_
namespace seqan {
// ============================================================================
// Forwards
// ============================================================================
// ============================================================================
// Classes
// ============================================================================
// ----------------------------------------------------------------------------
// Class ConcurrentQueue
// ----------------------------------------------------------------------------
/*!
* @class ConcurrentSuspendableQueue Concurrent Suspendable Queue
* @extends ConcurrentQueue
* @headerfile <seqan/parallel.h>
* @brief Thread-safe suspendable queue for multiple producers and multiple consumers.
*
* @signature template <typename TValue, typename TSpec>
* class ConcurrentQueue<TValue, Suspendable<TSpec> >;
*
* @tparam TValue Element type of the queue.
* @tparam TSpec Tag for further specializing the Concurrent Queue. Default is <tt>void</tt>.
*
* In contrast to the standard @Class.ConcurrentQueue@ this queue suspends the caller
* if it pops a value when the queue was empty or appends a value to a full
* fixed-size queue.
*
* The implementation uses Mutexes and Events to optionally suspend the calling
* thread and uses a @Class.AllocString@ as ring buffer.
*
*/
template <typename TSpec = void>
struct Suspendable;
template <typename TValue, typename TSpec>
class ConcurrentQueue<TValue, Suspendable<TSpec> >
{
public:
typedef typename Host<ConcurrentQueue>::Type TString;
typedef typename Size<TString>::Type TSize;
size_t readerCount;
size_t writerCount;
TString data;
TSize occupied;
TSize back;
TSize front;
std::mutex cs;
std::condition_variable more;
bool virgin;
ConcurrentQueue():
readerCount(0),
writerCount(0),
occupied(0),
back(0),
front(0),
virgin(true)
{}
~ConcurrentQueue()
{
SEQAN_ASSERT_EQ(writerCount, 0u);
// wait for all pending readers to finish
while (readerCount != 0u)
{}
typename Iterator<TString, Standard>::Type arrayBegin = begin(data, Standard());
if (occupied != 0)
{
if (front < back)
{
arrayDestruct(arrayBegin + front, arrayBegin + back);
}
else
{
arrayDestruct(arrayBegin, arrayBegin + back);
arrayDestruct(arrayBegin + front, arrayBegin + capacity(data));
}
}
_setLength(data, 0);
}
};
template <typename TValue>
class ConcurrentQueue<TValue, Suspendable<Limit> >:
public ConcurrentQueue<TValue, Suspendable<> >
{
public:
typedef ConcurrentQueue<TValue, Suspendable<> > TBase;
typedef typename Host<ConcurrentQueue>::Type TString;
typedef typename Size<TString>::Type TSize;
std::condition_variable less;
ConcurrentQueue(TSize maxSize):
TBase()
{
reserve(this->data, maxSize, Exact());
_setLength(this->data, maxSize);
}
ConcurrentQueue(ConcurrentQueue const & other):
TBase((TBase const &)other)
{}
};
template <typename TValue>
struct DefaultOverflowImplicit<ConcurrentQueue<TValue, Suspendable<Limit> > >
{
typedef Limit Type;
};
template <typename TValue, typename TSpec>
inline void
lockReading(ConcurrentQueue<TValue, Suspendable<TSpec> > &)
{}
template <typename TValue, typename TSpec>
inline void
unlockReading(ConcurrentQueue<TValue, Suspendable<TSpec> > & me)
{
{
std::lock_guard<std::mutex> lock(me.cs);
if (--me.readerCount != 0u)
return;
}
me.less.notify_all(); // publish the condition that reader count is 0.
}
template <typename TValue, typename TSpec>
inline void
lockWriting(ConcurrentQueue<TValue, Suspendable<TSpec> > &)
{}
template <typename TValue, typename TSpec>
inline void
unlockWriting(ConcurrentQueue<TValue, Suspendable<TSpec> > & me)
{
{
std::lock_guard<std::mutex> lk(me.cs);
if (--me.writerCount != 0u)
return;
}
me.more.notify_all(); // publish the condition, that writer count is 0.
}
template <typename TValue, typename TSize, typename TSpec>
inline void
setReaderCount(ConcurrentQueue<TValue, Suspendable<TSpec> > & me, TSize readerCount)
{
std::unique_lock<std::mutex> lock(me.cs);
me.readerCount = readerCount;
}
template <typename TValue, typename TSize, typename TSpec>
inline void
setWriterCount(ConcurrentQueue<TValue, Suspendable<TSpec> > & me, TSize writerCount)
{
std::unique_lock<std::mutex> lock(me.cs);
me.writerCount = writerCount;
}
template <typename TValue, typename TSize1, typename TSize2, typename TSpec>
inline void
setReaderWriterCount(ConcurrentQueue<TValue, Suspendable<TSpec> > & me, TSize1 readerCount, TSize2 writerCount)
{
std::unique_lock<std::mutex> lock(me.cs);
me.readerCount = readerCount;
me.writerCount = writerCount;
}
template <typename TValue, typename TSize, typename TSpec>
inline bool
waitForMinSize(ConcurrentQueue<TValue, Suspendable<TSpec> > & me,
TSize minSize)
{
std::unique_lock<std::mutex> lock(me.cs);
while (me.occupied < minSize && me.writerCount > 0u)
me.more.wait(lock);
return me.occupied >= minSize;
}
template <typename TValue, typename TSpec>
inline bool
empty(ConcurrentQueue<TValue, Suspendable<TSpec> > const & me)
{
return me.occupied == 0;
}
template <typename TValue, typename TSpec>
inline typename Size<ConcurrentQueue<TValue, Suspendable<TSpec> > >::Type
length(ConcurrentQueue<TValue, Suspendable<TSpec> > const & me)
{
return me.occupied;
}
template <typename TValue, typename TSpec>
inline bool
_popFront(TValue & result, ConcurrentQueue<TValue, Suspendable<TSpec> > & me,
std::unique_lock<std::mutex> & lk)
{
typedef ConcurrentQueue<TValue, Suspendable<TSpec> > TQueue;
typedef typename Host<TQueue>::Type TString;
typedef typename Size<TString>::Type TSize;
typedef typename Iterator<TString, Standard>::Type TIter;
TSize cap = capacity(me.data);
while (me.occupied == 0u && me.writerCount > 0u)
me.more.wait(lk);
if (me.occupied == 0u)
return false;
SEQAN_ASSERT_NEQ(me.occupied, 0u);
// extract value and destruct it in the data string
TIter it = begin(me.data, Standard()) + me.front;
std::swap(result, *it);
valueDestruct(it);
me.front = (me.front + 1) % cap;
me.occupied--;
/* now: either me.occupied > 0 and me.nextout is the index
of the next occupied slot in the buffer, or
me.occupied == 0 and me.nextout is the index of the next
(empty) slot that will be filled by a producer (such as
me.nextout == me.nextin) */
return true;
}
template <typename TValue, typename TSpec>
inline bool
_popBack(TValue & result,
ConcurrentQueue<TValue, Suspendable<TSpec> > & me,
std::unique_lock<std::mutex> & lk)
{
typedef ConcurrentQueue<TValue, Suspendable<TSpec> > TQueue;
typedef typename Host<TQueue>::Type TString;
typedef typename Size<TString>::Type TSize;
typedef typename Iterator<TString, Standard>::Type TIter;
TSize cap = capacity(me.data);
while (me.occupied == 0u && me.writerCount > 0u)
me.more.wait(lk);
if (me.occupied == 0u)
return false;
SEQAN_ASSERT_NEQ(me.occupied, 0u);
me.back = (me.back + cap - 1) % cap;
// extract value and destruct it in the data string
TIter it = begin(me.data, Standard()) + me.back;
std::swap(result, *it);
valueDestruct(it);
me.occupied--;
/* now: either me.occupied > 0 and me.nextout is the index
of the next occupied slot in the buffer, or
me.occupied == 0 and me.nextout is the index of the next
(empty) slot that will be filled by a producer (such as
me.nextout == me.nextin) */
return true;
}
template <typename TValue, typename TSpec>
inline bool
popFront(TValue & result, ConcurrentQueue<TValue, Suspendable<TSpec> > & me)
{
std::unique_lock<std::mutex> lock(me.cs);
return _popFront(result, me, lock);
}
template <typename TValue>
inline bool
popFront(TValue & result, ConcurrentQueue<TValue, Suspendable<Limit> > & me)
{
{
std::unique_lock<std::mutex> lk(me.cs);
if (!_popFront(result, me, lk))
return false;
}
me.less.notify_all();
return true;
}
template <typename TValue, typename TSpec>
inline bool
popBack(TValue & result, ConcurrentQueue<TValue, Suspendable<TSpec> > & me)
{
std::unique_lock<std::mutex> lk(me.cs);
return _popBack(result, me, lk);
}
template <typename TValue>
inline bool
popBack(TValue & result, ConcurrentQueue<TValue, Suspendable<Limit> > & me)
{
{
std::unique_lock<std::mutex> lk(me.cs);
if (!_popBack(result, me, lk))
return false;
}
me.less.notify_all();
return true;
}
template <typename TValue, typename TValue2, typename TSpec, typename TExpand>
inline bool
appendValue(ConcurrentQueue<TValue, Suspendable<TSpec> > & me,
TValue2 && val,
Tag<TExpand> expandTag)
{
typedef ConcurrentQueue<TValue, Suspendable<TSpec> > TQueue;
typedef typename Host<TQueue>::Type TString;
typedef typename Size<TString>::Type TSize;
{
std::lock_guard<std::mutex> lock(me.cs);
TSize cap = capacity(me.data);
if (me.occupied >= cap)
{
// increase capacity
_setLength(me.data, cap);
reserve(me.data, cap + 1, expandTag);
TSize delta = capacity(me.data) - cap;
// create a gap of delta many values between tail and head
_clearSpace(me.data, delta, me.back, me.back, expandTag);
if (me.occupied != 0 && me.back <= me.front)
me.front += delta;
cap += delta;
}
valueConstruct(begin(me.data, Standard()) + me.back, val);
me.back = (me.back + 1) % cap;
me.occupied++;
}
/* now: either me.occupied < BSIZE and me.nextin is the index
of the next empty slot in the buffer, or
me.occupied == BSIZE and me.nextin is the index of the
next (occupied) slot that will be emptied by a consumer
(such as me.nextin == me.nextout) */
me.more.notify_all();
return true;
}
template <typename TValue, typename TValue2, typename TSpec, typename TExpand>
inline bool
appendValue(ConcurrentQueue<TValue, Suspendable<Limit> > & me,
TValue2 && val,
Tag<TExpand> expandTag);
template <typename TValue, typename TValue2>
inline bool
appendValue(ConcurrentQueue<TValue, Suspendable<Limit> > & me,
TValue2 && val,
Limit)
{
typedef ConcurrentQueue<TValue, Suspendable<Limit> > TQueue;
typedef typename Host<TQueue>::Type TString;
typedef typename Size<TString>::Type TSize;
{
std::unique_lock<std::mutex> lock(me.cs);
TSize cap = capacity(me.data);
while (me.occupied >= cap && me.readerCount > 0u)
me.less.wait(lock);
if (me.occupied >= cap)
return false;
SEQAN_ASSERT_LT(me.occupied, cap);
valueConstruct(begin(me.data, Standard()) + me.back, val);
me.back = (me.back + 1) % cap;
me.occupied++;
}
/* now: either me.occupied < BSIZE and me.nextin is the index
of the next empty slot in the buffer, or
me.occupied == BSIZE and me.nextin is the index of the
next (occupied) slot that will be emptied by a consumer
(such as me.nextin == me.nextout) */
me.more.notify_all();
return true;
}
template <typename TValue, typename TValue2, typename TSpec>
inline bool
appendValue(ConcurrentQueue<TValue, Suspendable<TSpec> > & me,
TValue2 && val)
{
return appendValue(me, val, typename DefaultOverflowImplicit<ConcurrentQueue<TValue, Suspendable<TSpec> > >::Type());
}
} // namespace seqan
#endif // #ifndef SEQAN_PARALLEL_PARALLEL_QUEUE_SUSPENDABLE_H_
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