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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Rene Rahn <rene.rahn@fu-berlin.de>
// ==========================================================================
#ifndef INCLUDE_SEQAN_ALIGN_PARALLEL_DP_SETTINGS_H_
#define INCLUDE_SEQAN_ALIGN_PARALLEL_DP_SETTINGS_H_
namespace seqan
{
// ============================================================================
// Forwards
// ============================================================================
// ============================================================================
// Tags, Classes, Enums
// ============================================================================
// Translates global function interface into setting struct.
template <typename TScoringScheme_, typename TDPTraits = DPTraits::GlobalLinear>
struct DPSettings
{
using TTraits = TDPTraits;
using TScoringScheme = TScoringScheme_;
using TBandConfig = DPBandConfig<typename TDPTraits::TBandType>;
TScoringScheme scoringScheme;
TBandConfig bandScheme;
DPSettings() = default;
explicit DPSettings(TScoringScheme score) : scoringScheme(std::move(score))
{}
};
#ifdef SEQAN_SIMD_ENABLED
// Simd version of DP settings.
template <typename TDPSettings, typename TOffsetSpec = False>
struct SimdDPSettings : public TDPSettings
{
//-------------------------------------------------------------------------
// Member Types.
using TTraits = typename TDPSettings::TTraits;
using TScoringScheme = typename TDPSettings::TScoringScheme;
using TScoreValue = typename Value<TScoringScheme>::Type;
using TScoreValueSimd = typename SimdVector<
std::conditional_t<std::is_same<TOffsetSpec, BlockOffsetOptimization>::value,
int16_t,
TScoreValue>>::Type;
using TSimdScoringScheme = Score<TScoreValueSimd, ScoreSimdWrapper<TScoringScheme>>;
//-------------------------------------------------------------------------
// Members.
TSimdScoringScheme simdScoringScheme;
//-------------------------------------------------------------------------
// Constructor.
SimdDPSettings() = default;
explicit SimdDPSettings(TScoringScheme score) :
TDPSettings(std::move(score)),
simdScoringScheme(score)
{}
};
#endif // SEQAN_SIMD_ENABLED
// ============================================================================
// Metafunctions
// ============================================================================
// ============================================================================
// Functions
// ============================================================================
} // namespace seqan
#endif // INCLUDE_SEQAN_ALIGN_PARALLEL_DP_SETTINGS_H_
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