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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Andreas Gogol-Döring <andreas.doering@mdc-berlin.de>
// TODO(holtgrew): Or is this by Dave?
// ==========================================================================
// Pointer-like data structure that helps with the management of volatile
// data, used in external string during swapping. See class documentation
// for more details
// ==========================================================================
#ifndef SEQAN_BASIC_BASIC_VOLATILE_PTR_H_
#define SEQAN_BASIC_BASIC_VOLATILE_PTR_H_
namespace seqan {
// ============================================================================
// Forwards
// ============================================================================
// ============================================================================
// Tags, Classes, Enums
// ============================================================================
// TODO(holtgrew): Is volatile pointer the correct name?
// TODO(holtgrew): Metafunctions etc. missing.
/*!
* @class VolatilePtr
* @headerfile <seqan/basic.h>
* @brief Helper data structure for handling volatile data.
*
* @signature template <typename T>
* class VolatilePtr;
*
* @tparam T The pointed-to type.
*
* Allows you to handle volatile data (used by ext. string during swapping).
*
* Imagine volatile pointers as nodes in an undirected graph. When you assign one to another then they are connected.
* All pointers in a connection component points to the same value. By calling nukeCopies you can destroy
* the component and set all pointers to <tt>NULL</tt>.
*/
template < typename Type >
struct VolatilePtr
{
typedef VolatilePtr Self_;
typedef VolatilePtr* SelfPtr_;
typedef VolatilePtr& SelfRef_;
typedef Type& reference;
typedef const Type& const_reference;
typedef Type* pointer;
pointer ptr;
SelfPtr_ next; // prev == NULL means this is the master node
SelfPtr_ prev; // prev == NULL means this is the master node
VolatilePtr() { // volatile pinters behave like normal pointers
prev = this; // and are not initialized (ptr) per default
next = this;
}
VolatilePtr(const pointer _p) {
ptr = _p;
prev = this;
next = this;
}
VolatilePtr(const Self_& _vp) {
ptr = _vp.ptr;
prev = this;
next = this;
}
VolatilePtr(SelfRef_ _vp) {
ptr = _vp.ptr;
prev = this;
next = this;
if (ptr) hangOn(_vp);
}
~VolatilePtr() {
hangOff();
}
template <typename size_type>
inline reference operator[] (size_type offset) {
return ptr[offset];
}
template <typename size_type>
inline const_reference operator[] (size_type offset) const {
return ptr[offset];
}
inline Self_& operator=(Self_ const &Right_) {
hangOff();
ptr = Right_.ptr;
if (ptr) hangOn(const_cast<Self_&>(Right_));
return *this;
}
inline Self_& operator=(pointer const Right_) {
hangOff();
ptr = Right_;
return *this;
}
// TODO(holtgrew): Move to global function?
inline bool isLonely() {
return next == this;
}
// TODO(holtgrew): Move to global function?
inline void nukeCopies() {
SelfPtr_ p = next;
while (p != this) {
SelfPtr_ tmp = p->next;
p->ptr = NULL;
p->prev = p;
p->next = p;
p = tmp;
}
prev = this;
next = this;
}
// TODO(holtgrew): Move to global function?
inline bool operator== (const Self_ &I) const {
return ptr == I.ptr;
}
// TODO(holtgrew): Move to global function?
inline bool operator!= (const Self_ &I) const {
return ptr != I.ptr;
}
inline operator pointer () const {
return ptr;
}
private:
inline void hangOn(SelfRef_ _prev) {
// hang on between _prev and _prev.next
prev = &_prev;
next = _prev.next;
_prev.next = this;
next->prev = this;
}
inline void hangOff() {
next->prev = prev;
prev->next = next;
next = this;
prev = this;
}
};
// ============================================================================
// Metafunctions
// ============================================================================
// ============================================================================
// Functions
// ============================================================================
// ----------------------------------------------------------------------------
// Function nukeCopies()
// ----------------------------------------------------------------------------
/*!
* @fn VolatilePtr#nukeCopies
* @brief Reset all pointers connected to a given one.
*
* @signature void nukeCopies(ptr);
*
* @param[in] ptr One pointer of the connected component to reset.
*/
// TODO(holtgrew): Remove this version?
template <typename TValue>
inline void nukeCopies(TValue * &)
{
}
template <typename TValue>
inline void nukeCopies(VolatilePtr<TValue> & ptr)
{
ptr.nukeCopies();
}
} // namespace seqan
#endif // #ifndef SEQAN_BASIC_BASIC_VOLATILE_PTR_H_
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