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//![includes]
#include <iostream>
#include <seqan/store.h>
#include <seqan/misc/svg.h>
using namespace seqan;
int main()
{
CharString fastaFileName = getAbsolutePath("demos/tutorial/fragment_store/example.fa");
CharString samFileName = getAbsolutePath("demos/tutorial/fragment_store/example.sam");
typedef FragmentStore<> TStore;
TStore store;
loadContigs(store, toCString(fastaFileName));
BamFileIn file(toCString(samFileName));
readRecords(store, file);
//![includes]
//![ascii]
AlignedReadLayout layout;
layoutAlignment(layout, store);
printAlignment(std::cout, layout, store, 1, 0, 150, 0, 36);
//![ascii]
//![svg]
SVGFile svg("layout.svg");
printAlignment(svg, layout, store, 1, 0, 150, 0, 36);
return 0;
}
//![svg]
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