File: example6.cpp

package info (click to toggle)
seqan2 2.4.0%2Bdfsg-8~bpo8%2B1
  • links: PTS, VCS
  • area: main
  • in suites: jessie-backports
  • size: 223,616 kB
  • sloc: cpp: 256,884; ansic: 91,671; python: 8,339; sh: 995; xml: 570; makefile: 242; awk: 51
file content (28 lines) | stat: -rw-r--r-- 581 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
//![header]
#include <seqan/sequence.h>
#include <seqan/stream.h>
#include <seqan/seeds.h>

using namespace seqan;

int main()
{
//![header]
//![example]
    typedef Seed<Simple>    TSeed;
    typedef SeedSet<TSeed> TSeedSet;

    TSeedSet seedSet;
    addSeed(seedSet, TSeed(0, 0, 2), Single());
    addSeed(seedSet, TSeed(3, 5, 2), Single());
    addSeed(seedSet, TSeed(4, 2, 3), Single());
    addSeed(seedSet, TSeed(9, 9, 2), Single());

    String<TSeed> result;
    chainSeedsGlobally(result, seedSet, SparseChaining());
//![example]

//![footer]
    return 0;
}
//![footer]