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# ===========================================================================
# SeqAn - The Library for Sequence Analysis
# ===========================================================================
# File: /apps/razers/CMakeLists.txt
#
# CMakeLists.txt file for RazerS.
# ===========================================================================
cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_razers CXX)
message (STATUS "Configuring apps/razers")
set (SEQAN_APP_VERSION "1.5.8")
if (SEQAN_TRAVIS_BUILD)
message (STATUS " Skipping build and test of razers on Travis CI.")
return ()
endif (SEQAN_TRAVIS_BUILD)
if ("$ENV{DEB_BUILD_ARCH}" STREQUAL "mips")
message (STATUS " Not building razers on mips due to memory requirements.")
return ()
endif ()
if ("$ENV{DEB_BUILD_ARCH}" STREQUAL "mipsel")
message (STATUS " Not building razers on mipsel due to memory requirements.")
return ()
endif ()
# ----------------------------------------------------------------------------
# Dependencies
# ----------------------------------------------------------------------------
# Search SeqAn and select dependencies.
if (NOT "${SEQAN_BUILD_SYSTEM}" STREQUAL "DEVELOP")
find_package (SeqAn CONFIG REQUIRED)
endif ()
# ----------------------------------------------------------------------------
# Build Setup
# ----------------------------------------------------------------------------
# Add include directories.
include_directories (${SEQAN_INCLUDE_DIRS})
# Add definitions set by find_package (SeqAn).
add_definitions (${SEQAN_DEFINITIONS})
# Add definitions set by the build system.
add_definitions (-DSEQAN_APP_VERSION="${SEQAN_APP_VERSION}")
add_definitions (-DSEQAN_REVISION="${SEQAN_REVISION}")
add_definitions (-DSEQAN_DATE="${SEQAN_DATE}")
# Update the list of file names below if you add source files to your application.
add_executable (razers razers.cpp
razers.h
param_tabs.h
param_tabs.cpp
param_tabs.inc
outputFormat.h
paramChooser.h
razers_matepairs.h
razers_spliced.h
readSimulator.h
param_tabs.h)
# Add dependencies found by find_package (SeqAn).
target_link_libraries (razers ${SEQAN_LIBRARIES})
# Add CXX flags found by find_package (SeqAn).
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${SEQAN_CXX_FLAGS}")
# ----------------------------------------------------------------------------
# Installation
# ----------------------------------------------------------------------------
# Set variables for installing, depending on the selected build type.
if (NOT SEQAN_PREFIX_SHARE_DOC)
seqan_setup_install_vars (razers)
endif (NOT SEQAN_PREFIX_SHARE_DOC)
# Install razers in ${PREFIX}/bin directory
install (TARGETS razers
DESTINATION ${CMAKE_INSTALL_BINDIR})
# Install non-binary files for the package to "." for app builds and
# ${PREFIX}/share/doc/razers for SeqAn release builds.
install (FILES LICENSE
README
DESTINATION ${SEQAN_PREFIX_SHARE_DOC})
install (FILES example/genome.fa
example/reads.fa
example/reads2.fa
DESTINATION ${SEQAN_PREFIX_SHARE_DOC}/example)
# ----------------------------------------------------------------------------
# App Test
# ----------------------------------------------------------------------------
seqan_add_app_test (razers)
# ----------------------------------------------------------------------------
# Setup Common Tool Description for Generic Workflow Nodes
# ----------------------------------------------------------------------------
# Include executable razers in CTD structure.
set (SEQAN_CTD_EXECUTABLES ${SEQAN_CTD_EXECUTABLES} razers CACHE INTERNAL "")
# ----------------------------------------------------------------------------
# CPack Install
# ----------------------------------------------------------------------------
if (SEQAN_BUILD_SYSTEM STREQUAL "APP:razers")
set (CPACK_PACKAGE_NAME "razers")
set (CPACK_PACKAGE_DESCRIPTION_SUMMARY "RazerS - Read Mapping With Controllable Sensitivity")
set (CPACK_DEBIAN_PACKAGE_MAINTAINER "David Weese <david.weese@fu-berlin.de>")
set (CPACK_PACKAGE_VENDOR "SeqAn Team, FU Berlin")
seqan_configure_cpack_app (razers "RazerS")
endif (SEQAN_BUILD_SYSTEM STREQUAL "APP:razers")
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