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#!/usr/bin/make -f
# Uncomment this to turn on verbose mode.
export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all reproducible=-fixfilepath
# reproducible=-fixfilepath is needed due to how the tests get their file paths :-(
include /usr/share/dpkg/pkg-info.mk
export HOME=$(CURDIR)/fakehome
include /usr/share/dpkg/architecture.mk
ifneq (,$(filter mips mipsel mips64el,$(DEB_BUILD_ARCH)))
DEB_CXXFLAGS_MAINT_APPEND+=-mxgot
endif
ifneq (,$(filter mips mipsel,$(DEB_BUILD_ARCH)))
DEB_CXXFLAGS_MAINT_APPEND+=-g1
DEB_CFLAGS_MAINT_APPEND+=-g1
endif
# As per upstream's instructions
ifndef SEQAN2_SALSA_CI
export DEB_CFLAGS_MAINT_APPEND+=-O3
export DEB_CXXFLAGS_MAINT_APPEND+=-DNDEBUG -O3
else
export DEB_CFLAGS_MAINT_APPEND+=-O1
export DEB_CXXFLAGS_MAINT_APPEND+=-DNDEBUG -O1
endif
# Disable parallel building to save memory
# MAX_PARALLEL=--max-parallel=1
pkgapps=seqan-apps
pkgdev=libseqan2-dev
%:
dh $@
override_dh_auto_configure-arch:
ifeq ($(DEB_HOST_ARCH),armhf)
# The following tests FAILED:
# 46 - test_test_index_crosscompare_dna (Bus error)
# 52 - test_test_index_fm_rank_dictionary (Bus error)
sed -i \
-e '/ test_test_index_crosscompare_dna /d' \
-e '/ test_test_index_fm_rank_dictionary /d' \
tests/index/CMakeLists.txt
endif
ifeq ($(DEB_HOST_ARCH),mips)
# The following tests FAILED:
# 7 - test_align_parallel_data_structures (Child aborted)
sed -i \
-e '/ test_align_parallel_data_structures /d' \
tests/index/CMakeLists.txt
endif
export DEB_BUILD_ARCH=${DEB_BUILD_ARCH}
ifndef SEQAN2_SALSA_CI
dh_auto_configure --arch -- \
-DSEQAN_STATIC_APPS=False \
-DSEQAN_DISABLE_VERSION_CHECK=YES \
-DSEQAN_STRIP_APPS_BUILD_PATH="$(CURDIR)" \
-DSEQAN_NO_DOX=1
else
dh_auto_configure --arch -- \
-DSEQAN_STATIC_APPS=False \
-DSEQAN_DISABLE_VERSION_CHECK=YES \
-DALIGN_SIMD_TEST=FALSE \
-DALIGN_PARALLEL_SIMD_TEST=FALSE \
-DSEQAN_STRIP_APPS_BUILD_PATH="$(CURDIR)" \
-DSEQAN_NO_DOX=1
endif
override_dh_auto_configure-indep:
dh_auto_configure --indep -B build -- \
-DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 \
-DSEQAN_DISABLE_REVISION_INFO=1
override_dh_auto_build-arch:
dh_auto_build --arch ${MAX_PARALLEL}
# can't make dox, "seqansphinx" is not yet packaged
override_dh_auto_install-indep:
dh_auto_install --indep -B build --destdir=$(CURDIR)/debian/$(pkgdev)/
rm -Rf $(CURDIR)/debian/$(pkgdev)/usr/share/doc/seqan
override_dh_install-indep:
dh_install --indep
# Delete additional LICENSE and compiled Python files
if [ -d $(CURDIR)/debian/$(pkgdev) ] ; then \
find $(CURDIR)/debian/$(pkgdev) -type f -name LICENSE -delete ; \
find $(CURDIR)/debian/$(pkgdev) -type f -name "*.pyc" -delete ; \
fi
override_dh_install-arch:
dh_install --arch
# Delete additional LICENSE files
find $(CURDIR)/debian/$(pkgapps) -type f -name LICENSE -delete || /bin/true
find $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin -type f \
-name "*.sh" | xargs chmod a+x
# for app in $$(ls $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin); \
# do $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin/$${app} \
# --write-ctd $${app}.ctd && CTDConverter cwl -i $${app}.ctd \
# -o $(CURDIR)/debian/$(pkgapps)/usr/share/commonwl/${app}.cwl; \
# done;
# rm *.ctd
# find $(CURDIR)/debian/$(pkgapps)/usr/share/commonwl -type f \
# -name "*.cwl" | xargs chmod a+x
override_dh_auto_clean:
dh_auto_clean
find . -type f -name "*.pyc" -delete
if [ -d orig ] ; then \
for header in `find orig -name "*generated_forwards.h"` ; do \
mv $${header} `echo $$header | sed 's?orig/??'` ; \
done ; \
fi
rm -rf orig
override_dh_installman-arch:
dh_link --arch
if [ -d $(CURDIR)/debian/$(pkgapps)/usr/bin ] ; then \
find $(CURDIR)/debian/$(pkgapps)/usr/bin -type l -xtype l -delete ; \
fi
$(CURDIR)/debian/generate_manpages
dh_installman --arch
override_dh_link-arch:
dh_link --arch
# Some binaries (eg. splazer) are not built in 32-bit architectures so
# remove their (broken) symlinks.
if [ -d $(CURDIR)/debian/$(pkgapps)/usr/bin ] ; then \
find $(CURDIR)/debian/$(pkgapps)/usr/bin -type l -xtype l -delete ; \
fi
override_dh_fixperms-arch:
dh_fixperms --arch
for bin in `ls $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin/*.sh` ; do \
chmod +x $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin/`basename $${bin}` ; \
done
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