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Swiss Army Knife tool... It slices and dices and makes the laundry!
This tool allows one to cut sequences and parts of sequences out of sequence
files. It supports all formats supported by the AutoSeqFormat class from
SeqAn, including FASTA, FASTQ and QSeq (Illumina format).
Output of sak --help:
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*** Swiss Army Knife ***
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Usage: sak [OPTION]... <SOURCE SEQUENCE FILE>
Main Options:
-o, --output FILE set output filename (default: use stdout)
-q, --qual enable Fastq output (default: Fasta)
-h, --help print this help
Extract Options:
-s, --sequence NUM select a single sequence by index
-sn, --sequence-name NAME select a single sequence by name
-ss, --sequences START END select sequences (default: select all)
-i, --infix START END extract infix
-rc, --revcomp reverse complement
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