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samcat - SAM/BAM file concatenation and conversion
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SYNOPSIS
samcat [OPTIONS] <INFILE> [<INFILE> ...] [-o <OUTFILE>]
DESCRIPTION
This tool reads a set of input files in SAM or BAM format and outputs the concatenation of them. If the output
file name is omitted the result is written to standard output in SAM format.
(c) Copyright 2014 by David Weese.
-h, --help
Displays this help message.
--version
Display version information
-o, --output FILE
Output file name Valid filetypes are: .sam and .bam.
EXAMPLES
samcat mapped1.sam mapped2.sam -o merged.sam
Merge two SAM files.
samcat input.sam -o ouput.bam
Convert a SAM file into BAM format.
VERSION
samcat version: 0.1
Last update May 2014
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