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*************************************************
* Multiple sequence alignment - seqan2::T-Coffee *
* (c) Copyright 2009 by Tobias Rausch *
*************************************************
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Table of Contents
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1. Installation
2. Example
3. Contact
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1. Installation
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seqan2::T-Coffee is distributed with SeqAn, https://www.seqan.de.
You can build it using the latest snapshot or directly from
the Github repository.
Snapshot:
1) Download the latest snapshot of seqan2::T-Coffee (https://packages.seqan.de/seqan_tcoffee/)
2) Unzip it to a directory of your choice (e.g. snapshot)
3) cd snapshot/bin
4) ./seqan_tcoffee --help
Git:
1) git clone https://github.com/seqan/seqan.git
2) mkdir seqan_build
3) cd seqan_build
4) cmake ../seqan
5) make seqan_tcoffee
6) cd bin
7) ./seqan_tcoffee --help
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2. Example
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Accurate protein alignment:
./seqan_tcoffee -s seq.fa
./seqan_tcoffee -s seq.fa -f msf
Fast protein alignment:
./seqan_tcoffee -s seq.fa -m local
DNA alignment:
./seqan_tcoffee -s seq.fa -a dna
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3. Contact
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For questions or comments contact:
Tobias Rausch <rausch@inf.fu-berlin.de>
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