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I/O options:
database file : 512_simSeq1_5e-2.fa
query file : 512_simSeq2_5e-2.fa
alphabet : dna5
output file : minLen20.gff
output format : gff
User specified parameters:
minimal match length : 20
maximal error rate (epsilon) : 0.05
maximal x-drop : 10
k-mer (q-gram) length : 7
search forward strand : yes
search reverse complement : no
verification strategy : exact
maximal number of matches : 5000
duplicate removal every : 10000
Calculated parameters:
s^min : 10
threshold : 7
distance cut : 20
delta : 16
overlap : 1
Loaded 1 query sequence.
Loaded 1 database sequence.
All matches matches resulting from your search have an E-value of:
556.762 or smaller (match score = 1, error penalty = -2)
Constructing index...
Aligning all query sequences to database sequence...
seq1 length=1000000 numMatches=500 errorRate=0.05 matchMinLength=50 matchMaxLength=200
# SWIFT hits : 14720
Longest hit : 202
Avg hit length : 18
# Eps-matches : 604
Longest eps-match : 213
Avg match length : 109
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