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Initial Alignment
AATGGATGGCAAAATAGTTGTTCCATGAATACATCTCTAAAGAGCTTTGATGCTAATTTAGTCAAATTTTCAATACTGTACAATCTTCTCTAGAGCAGAGCAAAAGAATAAAAGCACTTCTAGCTAATATTATGTGGCAT
.................................................. TGCT.A..TAGTC..A...TC.ATACTGTAC.ATC.TCTCTAGAGCAGAG
ATGGCAA..T.GTTG.TCCATGAAT.C.TC...AA.G..CTT.GATGCTA A.TTAGTC.AA..TTCA.TAC.GT.CAA.CT...CT..AGC..AGC..A.
A...TAGT.GT.C.ATGA.TACATCTCTA..GAGCT..GATGCTA.T..A .TT..CAAT.CTG.AC.ATC.TC...AG..CAG..CAA..G.AT.A..GC
.................................................. CA.TACTGTACA.TCT.CTCTAGAGCAGAGCA...GA.TA...GCACT.C
.T.CATG.ATACATCTCT..AGAGC..TGATGCT.A..TAGTC..A...T ..................................................
TGA.T.CA...CT.A..AGC.TTGATGCTAA.TTAGTC.AA..TTCA.TA C.ATC.TCTCTAGAGCAGAGC...AG.AT...AGCAC.TCTAGCT.ATA.
.CAT.TCTAAAG.GCTTTGA..C.AA.TTAG.CAAATTT.CAAT.C.GTA T...CT..AGC..AGC..A.GA.T..AAG.ACT.CTAGCTA..AT.A..T
...AA.G..CTT.GATGCTAATT.AGTCAA.TT..CAAT.CTG.AC.ATC
.GAGCT..GATGCTA.T..AGTCA..T...CA.TACTGTACA.TCT.CTC
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G.CAAATTT.CAAT.C.GTACA.TCT...CTAGAGC..AGC.AA.G..T.
Final Consensus Alignment
AATGGATGGCAAAATAGTTGTTCCATGAATACATCTCTAAAGAGCTTTGATGCTAATTTAGTCAAATTTTCAATACTGTACAATCTTCTCTAGAGCAGAGCAAAAGAATAAAAGCACTTCTAGCTAATATTATGT-----
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