File: iterator_solution1.cpp

package info (click to toggle)
seqan2 2.5.2-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 228,748 kB
  • sloc: cpp: 257,602; ansic: 91,967; python: 8,326; sh: 1,056; xml: 570; makefile: 229; awk: 51; javascript: 21
file content (38 lines) | stat: -rw-r--r-- 1,137 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
#include <iostream>
#include <seqan/index.h>

using namespace seqan2;

int main()
{
    StringSet<String<char> > text;
    appendValue(text, "How much");
    appendValue(text, " wood would");
    appendValue(text, " a woodchuck chuck?");

    typedef Index<StringSet<String<char> > > TIndex;
    TIndex index(text);
    Iterator<TIndex, TopDown<> >::Type it(index);

    CharString pattern = "wood";
    while (repLength(it) < length(pattern))
    {
        // go down edge starting with the next pattern character
        if (!goDown(it, pattern[repLength(it)]))
            return 0;

        unsigned endPos = _min(repLength(it), length(pattern));
        // compare remaining edge characters with pattern
        std::cout << representative(it) << std::endl;
        if (infix(representative(it), parentRepLength(it) + 1, endPos) !=
            infix(pattern, parentRepLength(it) + 1, endPos))
            return 0;
    }

    // if we get here the pattern was found
    // output match positions
    for (unsigned i = 0; i < length(getOccurrences(it)); ++i)
        std::cout << getOccurrences(it)[i] << std::endl;

    return 0;
}