File: assignment_2_solution.cpp

package info (click to toggle)
seqan2 2.5.2-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 228,748 kB
  • sloc: cpp: 257,602; ansic: 91,967; python: 8,326; sh: 1,056; xml: 570; makefile: 229; awk: 51; javascript: 21
file content (20 lines) | stat: -rw-r--r-- 430 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
 
#include <iostream>
#include <seqan/sequence.h>
#include <seqan/stream.h>

using namespace seqan2;

int main()
{
    Dna5String genome = "ANTGGTTNCAACNGTAANTGCTGANNNACATGTNCGCGTGTA";

    Iterator<Dna5String, Rooted>::Type it = begin(genome);

    for (; !atEnd(it); goNext(it))
    {
        if (getValue(it) == 'N')
            value(it) = 'A';
    }
    std::cout << "Modified genome: " << genome << std::endl;
    return 0;
}