1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
|
//![main]
#include <seqan/stream.h>
#include <seqan/sequence_journaled.h>
using namespace seqan2;
int main()
{
//![main]
//![typedef]
typedef String<char, Journaled<Alloc<>, SortedArray, Alloc<> > > TJournaledString;
typedef Host<TJournaledString>::Type THost;
//![typedef]
//![init]
THost hostStr = "thisisahostsequence";
TJournaledString journalStr;
setHost(journalStr, hostStr);
std::cout << "After creating the Journaled String:" << std::endl;
std::cout << "Host: " << host(journalStr) << std::endl;
std::cout << "Journal: " << journalStr << std::endl;
std::cout << "Nodes: " << journalStr._journalEntries << std::endl;
std::cout << std::endl;
//![init]
//![modification]
insert(journalStr, 7, "modified");
erase(journalStr, 19, 27);
std::cout << "After modifying the Journaled String:" << std::endl;
std::cout << "Host: " << host(journalStr) << std::endl;
std::cout << "Journal: " << journalStr << std::endl;
std::cout << "Nodes: " << journalStr._journalEntries << std::endl;
std::cout << std::endl;
//![modification]
//![flatten]
flatten(journalStr);
std::cout << "After flatten the Journaled String:" << std::endl;
std::cout << "Host: " << host(journalStr) << std::endl;
std::cout << "Journal: " << journalStr << std::endl;
std::cout << "Nodes: " << journalStr._journalEntries << std::endl;
return 0;
}
//![flatten]
|
