File: assignment3_solution.cpp

package info (click to toggle)
seqan2 2.5.2-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 228,748 kB
  • sloc: cpp: 257,602; ansic: 91,967; python: 8,326; sh: 1,056; xml: 570; makefile: 229; awk: 51; javascript: 21
file content (16 lines) | stat: -rw-r--r-- 409 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
#include <iostream>
#include <seqan/index.h>

using namespace seqan2;

int main()
{
    typedef Index<CharString, IndexQGram<UngappedShape<4>, OpenAddressing> > TIndex;
    TIndex index("tobeornottobe");
    Finder<TIndex> finder(index);

    while (find(finder, "tobe"))
        std::cout << '[' << beginPosition(finder) << ',' << endPosition(finder) << ")\t" << infix(finder) << std::endl;

    return 0;
}