File: base.cpp

package info (click to toggle)
seqan2 2.5.2-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 228,748 kB
  • sloc: cpp: 257,602; ansic: 91,967; python: 8,326; sh: 1,056; xml: 570; makefile: 229; awk: 51; javascript: 21
file content (31 lines) | stat: -rw-r--r-- 926 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
#include <seqan/sequence.h>

//![vcfRecord]
using namespace seqan2;

class VcfRecord
{
public:
    int32_t rID;                          // CHROM
    int32_t beginPos;                     // POS
    CharString id;                        // ID
    CharString ref;                       // REF
    CharString alt;                       // ALT
    float qual;                           // QUAL
    CharString filter;                    // FILTER
    CharString info;                      // INFO
    CharString format;                    // FORMAT
    StringSet<CharString> genotypeInfos;  // <individual1> <individual2> ..

    // Constants for marking reference id and position as invalid.
    static const int32_t INVALID_REFID = -1;
    static const int32_t INVALID_POS = -1;
    // This function returns the float value for "invalid quality".
    static float MISSING_QUAL();
};
//![vcfRecord]

int main()
{
    return 0;
}