1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317
|
// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2026, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Rene Rahn <rene.rahn@fu-berlin.de>
// ==========================================================================
#ifndef INCLUDE_SEQAN_JOURNALED_STRING_TREE_JST_EXTENSION_BASE_H_
#define INCLUDE_SEQAN_JOURNALED_STRING_TREE_JST_EXTENSION_BASE_H_
namespace seqan2
{
// ============================================================================
// Forwards
// ============================================================================
// ----------------------------------------------------------------------------
// Metafunction GetPatternState
// ----------------------------------------------------------------------------
template <typename TExtension>
struct GetPatternState
{
using Type = Nothing;
};
// ----------------------------------------------------------------------------
// Metafunction ProxySelectionMethod
// ----------------------------------------------------------------------------
template <typename TAlgorithm>
struct ProxySelectionMethod
{
using Type = SelectValidProxy;
};
template <typename TAlgorithm>
struct ProxySelectionMethod<TAlgorithm const> :
ProxySelectionMethod<TAlgorithm>{};
// ============================================================================
// Tags, Classes, Enums
// ============================================================================
template <typename TPattern>
class JstExtension;
// ----------------------------------------------------------------------------
// Group ContextPostion
// ----------------------------------------------------------------------------
struct ContextBegin_;
using ContextBegin = Tag<ContextBegin_>;
struct ContextEnd_;
using ContextEnd = Tag<ContextEnd_>;
struct ContextRange_;
using ContextRange = Tag<ContextRange_>;
// ----------------------------------------------------------------------------
// Class JstExtensionBase
// ----------------------------------------------------------------------------
template <typename TExtension, typename TCxtPosition = ContextRange>
class JstExtensionBase
{
public:
using TState = typename GetPatternState<TExtension>::Type;
TExtension& _derived;
mutable TState _state;
JstExtensionBase(TExtension & ext) : _derived(ext)
{}
};
// ============================================================================
// Metafunctions
// ============================================================================
// ----------------------------------------------------------------------------
// Metafunction HasState
// ----------------------------------------------------------------------------
template <typename TObject>
struct HasState;
template <typename TPattern>
struct HasState<JstExtension<TPattern> > :
If<IsSameType<typename GetPatternState<JstExtension<TPattern> >::Type, Nothing>, False, True>::Type{};
template <typename TExtension, typename TCxtPosition>
struct HasState<JstExtensionBase<TExtension, TCxtPosition> > :
public HasState<TExtension>{};
// ----------------------------------------------------------------------------
// Metafunction ObservedValue
// ----------------------------------------------------------------------------
template <typename TPattern>
struct ObservedValue<JstExtension<TPattern> > :
public GetPatternState<JstExtension<TPattern> >{};
template <typename TPattern>
struct ObservedValue<JstExtension<TPattern> const> :
public GetPatternState<JstExtension<TPattern> const>{};
template <typename TExtension, typename TCxtPosition>
struct ObservedValue<JstExtensionBase<TExtension, TCxtPosition> > :
public ObservedValue<TExtension>{};
template <typename TExtension, typename TCxtPosition>
struct ObservedValue<JstExtensionBase<TExtension, TCxtPosition> const> :
public ObservedValue<TExtension const>{};
// ============================================================================
// Functions
// ============================================================================
namespace impl
{
// ----------------------------------------------------------------------------
// Function impl::run()
// ----------------------------------------------------------------------------
template <typename TExtension, typename TTraverser>
inline auto
run(TExtension & extension, TTraverser const & traverser, ContextBegin /*tag*/) ->
decltype(run(extension, contextBegin(traverser)))
{
return run(extension, contextBegin(traverser));
}
template <typename TExtension, typename TTraverser>
inline auto
run(TExtension & extension, TTraverser const & traverser, ContextEnd /*tag*/) ->
decltype(run(extension, contextEnd(traverser)))
{
return run(extension, contextEnd(traverser));
}
template <typename TExtension, typename TTraverser>
inline auto
run(TExtension & extension, TTraverser const & traverser, ContextRange /*tag*/) ->
decltype(run(extension, contextBegin(traverser), contextEnd(traverser)))
{
return run(extension, contextBegin(traverser), contextEnd(traverser));
}
} // namespace impl
// Returns the state.
// ----------------------------------------------------------------------------
// Function state();
// ----------------------------------------------------------------------------
template <typename TExtension, typename TCxtPosition>
inline typename GetPatternState<TExtension>::Type &
state(JstExtensionBase<TExtension, TCxtPosition> & extBase)
{
return extBase._state;
}
template <typename TExtension, typename TCxtPosition>
inline typename GetPatternState<TExtension const>::Type &
state(JstExtensionBase<TExtension, TCxtPosition> const & extBase)
{
return extBase._state;
}
// ----------------------------------------------------------------------------
// Function setState();
// ----------------------------------------------------------------------------
template <typename TExtension, typename TCxtPosition>
inline void
setState(JstExtensionBase<TExtension, TCxtPosition> & extBase,
typename GetPatternState<TExtension>::Type && state)
{
extBase._state = state;
}
// ----------------------------------------------------------------------------
// Function getObservedValue();
// ----------------------------------------------------------------------------
template <typename TExtension, typename TCxtPosition>
inline auto
getObservedValue(JstExtensionBase<TExtension, TCxtPosition> & extBase) -> decltype(state(extBase))
{
return state(extBase);
}
template <typename TExtension, typename TCxtPosition>
inline auto
getObservedValue(JstExtensionBase<TExtension, TCxtPosition> const & extBase) -> decltype(state(extBase))
{
return state(extBase);
}
// ----------------------------------------------------------------------------
// Function setObservedValue();
// ----------------------------------------------------------------------------
template <typename TExtension, typename TCxtPosition, typename TValue>
inline void
setObservedValue(JstExtensionBase<TExtension, TCxtPosition> & extBase,
TValue && val)
{
setState(extBase, std::forward<TValue>(val));
}
// ----------------------------------------------------------------------------
// Function run()
// ----------------------------------------------------------------------------
template <typename TExtension, typename TCxtPosition,
typename TTraverser,
typename TDelegate>
inline auto
run(JstExtensionBase<TExtension, TCxtPosition> & extension,
TTraverser const & traverser,
TDelegate && delegate)
#if !defined(COMPILER_WINTEL)
// the intel compiler on windows fails with this decltype, but can auto infer
// the return type itself (possible as of c++14).
-> decltype(impl::run(extension._derived, traverser, TCxtPosition()).first)
#endif
{
auto res = impl::run(extension._derived, traverser, TCxtPosition());
if (res.second)
delegate();
return res.first;
}
// ----------------------------------------------------------------------------
// Function find()
// ----------------------------------------------------------------------------
template <typename TContainer, typename TSpec,
typename TAlgorithm,
typename TDelegate,
typename TObserver>
inline void
find(TraverserImpl<TContainer, JstTraversalSpec<TSpec> > & traverser,
TAlgorithm & algorithm,
TDelegate && delegate,
TObserver & observer)
{
using TProxySelector = typename ProxySelectionMethod<TAlgorithm>::Type;
init(traverser, observer, TProxySelector());
while (!atEnd(traverser))
{
#if defined(JST_FIND_DEBUG)
_fillTestSet(traverser);
#endif
auto steps = run(algorithm, traverser, delegate);
advance(traverser, steps, observer, TProxySelector());
}
}
template <typename TContainer, typename TSpec,
typename TAlgorithm,
typename TDelegate>
inline void
find(TraverserImpl<TContainer, JstTraversalSpec<TSpec> > & traverser,
TAlgorithm & algorithm,
TDelegate && delegate)
{
if (HasState<TAlgorithm>::VALUE)
{
StackObserver<TAlgorithm> algoObserver(algorithm);
auto observer = makeObserverList(algoObserver);
find(traverser, algorithm, delegate, observer);
}
else
{ // Disabled observer.
auto observer = makeObserverList();
find(traverser, algorithm, delegate, observer);
}
}
} // namespace seqan2
#endif // #ifndef INCLUDE_SEQAN_JOURNALED_STRING_TREE_JST_EXTENSION_BASE_H_
|