1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
|
// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2026, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: David Weese <david.weese@fu-berlin.de>
// ==========================================================================
#ifndef SEQAN_HEADER_PIPE_COUNTER_H
#define SEQAN_HEADER_PIPE_COUNTER_H
namespace seqan2
{
//namespace seqan2_NAMESPACE_PIPELINING
//{
struct Counter;
template < typename TInput >
struct Value< Pipe< TInput, Counter > > {
typedef Pair<
typename Value<TInput>::Type,
typename Size<TInput>::Type,
Pack
> Type;
};
/*!
* @class Counter
* @extends Pipe
* @headerfile <seqan/pipe.h>
* @brief Extends the input stream by a second field which enumerates the elements.
*
* @signature template <typename TInput>
* class Pipe<TInput, Counter>;
*
* @tparam TInput The type of the pipeline module this module reads from.
*
* The output type is a Pair of input type and size type (i.e. <tt>Pair<Value<TInput>::Type, Size<TInput>::Type</tt>).
*
* The first output field is the original input stream.
*
* The second output field begins with 0 and increases by 1 per element.
*/
//////////////////////////////////////////////////////////////////////////////
// counter class
template < typename TInput >
struct Pipe< TInput, Counter >
{
TInput ∈
typename Value<Pipe>::Type tmp;
Pipe(TInput& _in):
in(_in) {}
inline typename Value<Pipe>::Type const & operator*() {
tmp.i1 = *in;
return tmp;
}
inline Pipe& operator++() {
++in;
++tmp.i2;
return *this;
}
};
//////////////////////////////////////////////////////////////////////////////
// global pipe functions
template < typename TInput >
inline bool control(Pipe< TInput, Counter > &me, ControlBeginRead const &command) {
if (!control(me.in, command)) return false;
me.tmp.i2 = 0;
return true;
}
//}
}
#endif
|
