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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2026, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Stephan Aiche <stephan.aiche@fu-berlin.de>
// ==========================================================================
// Tests for arg_parse/arg_parse_argument.h.
// ==========================================================================
#ifndef SEQAN_TESTS_ARG_PARSE_TEST_ARG_PARSE_ARGUMENT_H_
#define SEQAN_TESTS_ARG_PARSE_TEST_ARG_PARSE_ARGUMENT_H_
#include <seqan/basic.h>
#include "test_extensions.h"
#include <seqan/arg_parse/arg_parse_argument.h>
using namespace seqan2;
SEQAN_DEFINE_TEST(test_argument_string_type)
{
ArgParseArgument arg(ArgParseArgument::STRING);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::STRING);
}
SEQAN_DEFINE_TEST(test_argument_bool_type)
{
ArgParseArgument arg(ArgParseArgument::BOOL);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::BOOL);
}
SEQAN_DEFINE_TEST(test_argument_int_type)
{
ArgParseArgument arg(ArgParseArgument::INTEGER);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::INTEGER);
}
SEQAN_DEFINE_TEST(test_argument_int64_type)
{
ArgParseArgument arg(ArgParseArgument::INT64);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::INT64);
}
SEQAN_DEFINE_TEST(test_argument_double_type)
{
ArgParseArgument arg(ArgParseArgument::DOUBLE);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::DOUBLE);
}
SEQAN_DEFINE_TEST(test_argument_inputfile_type)
{
ArgParseArgument arg(ArgParseArgument::INPUT_FILE);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::INPUT_FILE);
}
SEQAN_DEFINE_TEST(test_argument_outputfile_type)
{
ArgParseArgument arg(ArgParseArgument::OUTPUT_FILE);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::OUTPUT_FILE);
}
SEQAN_DEFINE_TEST(test_argument_inputprefix_type)
{
ArgParseArgument arg(ArgParseArgument::INPUT_PREFIX);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::INPUT_PREFIX);
}
SEQAN_DEFINE_TEST(test_argument_outputprefix_type)
{
ArgParseArgument arg(ArgParseArgument::OUTPUT_PREFIX);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::OUTPUT_PREFIX);
}
SEQAN_DEFINE_TEST(test_argument_inputdirectory_type)
{
ArgParseArgument arg(ArgParseArgument::INPUT_DIRECTORY);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::INPUT_DIRECTORY);
}
SEQAN_DEFINE_TEST(test_argument_outputdirectory_type)
{
ArgParseArgument arg(ArgParseArgument::OUTPUT_DIRECTORY);
SEQAN_ASSERT_EQ(getArgumentType(arg), ArgParseArgument::OUTPUT_DIRECTORY);
}
SEQAN_DEFINE_TEST(test_argument_label)
{
ArgParseArgument arg(ArgParseArgument::STRING, "my_label");
SEQAN_ASSERT_EQ(getArgumentLabel(arg), "my_label");
}
SEQAN_DEFINE_TEST(test_argument_invalid_cast)
{
ArgParseArgument doubleArg(ArgParseArgument::DOUBLE);
_checkValue(doubleArg, "6.0221418e23");
_assignArgumentValue(doubleArg, "6.0221418e23");
_checkValue(doubleArg);
SEQAN_ASSERT_EQ(getArgumentValue(doubleArg), "6.0221418e23");
_checkValue(doubleArg, "-6.022");
_assignArgumentValue(doubleArg, "-6.022");
_checkValue(doubleArg);
SEQAN_ASSERT_EQ(getArgumentValue(doubleArg), "-6.022");
// Test _checkValue() with value.
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(doubleArg, "-6.022aaa"),
"the given value '-6.022aaa' cannot be casted to double");
// Test _checkValue() after assignment.
_assignArgumentValue(doubleArg, "-6.022aaa");
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(doubleArg),
"the given value '-6.022aaa' cannot be casted to double");
}
SEQAN_DEFINE_TEST(test_argument_min_max_boundaries)
{
ArgParseArgument arg(ArgParseArgument::DOUBLE);
setMinValue(arg, "1");
setMaxValue(arg, "6.0221418e23");
_checkValue(arg, "1");
_assignArgumentValue(arg, "1"); // should just work without throwing any exception
_checkValue(arg);
SEQAN_ASSERT_EQ(getArgumentValue(arg), "1");
// Test _checkValue() with argument and value.
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(arg, "-1"),
"the given value '-1' is not in the interval [1:6.0221418e23]");
// Test _checkValue() after assignment.
_assignArgumentValue(arg, "-1");
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(arg),
"the given value '-1' is not in the interval [1:6.0221418e23]");
// Tests _checkValue() with argument and value.
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(arg, "6.0321418e23"),
"the given value '6.0321418e23' is not in the interval [1:6.0221418e23]");
// Test _checkValue() after assignment.
_assignArgumentValue(arg, "6.0321418e23");
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(arg),
"the given value '6.0321418e23' is not in the interval [1:6.0221418e23]");
}
SEQAN_DEFINE_TEST(test_argument_valid_values)
{
ArgParseArgument arg(ArgParseArgument::STRING);
setValidValues(arg, "this that");
_checkValue(arg, "this");
_assignArgumentValue(arg, "this");
_checkValue(arg);
SEQAN_ASSERT_EQ(getArgumentValue(arg), "this");
// Test _checkValue() with argument and value.
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(arg, "not-this-or-that"),
"the given value 'not-this-or-that' is not in the list of allowed values [this, that]");
// Test _checkValue after assignment.
_assignArgumentValue(arg, "not-this-or-that");
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(arg),
"the given value 'not-this-or-that' is not in the list of allowed values [this, that]");
ArgParseArgument filearg(ArgParseArgument::INPUT_FILE);
setValidValues(filearg, ".txt .fasta");
_assignArgumentValue(filearg, "textfile.txt");
SEQAN_ASSERT_EQ(value(filearg.value, 0), "textfile.txt");
// Test getFileExtension() function.
SEQAN_ASSERT_EQ(getFileExtension(filearg), ".txt");
// different case should also work
_assignArgumentValue(filearg, "textfile.tXT");
SEQAN_ASSERT_EQ(value(filearg.value, 0), "textfile.tXT");
// Test getFileExtension() function.
SEQAN_ASSERT_EQ(getFileExtension(filearg), ".txt");
// Test getFileExtension() function with explicit file extension.
filearg._fileExtensions.push_back(".fa");
SEQAN_ASSERT_EQ(getFileExtension(filearg), ".fa");
SEQAN_ASSERT_EQ(getFileExtension(filearg, 0), ".fa");
// Test _checkValue() with argument and value.
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(filearg, "not-a-validfile.qxt"),
"the given path 'not-a-validfile.qxt' does not have one of the valid file extensions [*.txt, *.fasta]; the file extension was overridden to be '.fa'");
// Test _checkValue after assignment.
_assignArgumentValue(filearg, "not-a-validfile.qxt");
SEQAN_TEST_EXCEPTION_WITH_MESSAGE(ParseError,
_checkValue(filearg),
"the given path 'not-a-validfile.qxt' does not have one of the valid file extensions [*.txt, *.fasta]; the file extension was overridden to be '.fa'");
}
SEQAN_DEFINE_TEST(test_argument_valid_values_directories)
{
ArgParseArgument dirarg(ArgParseArgument::INPUT_DIRECTORY);
setValidValues(dirarg, ".dir1 .dir2");
_assignArgumentValue(dirarg, "directory.dir1");
SEQAN_ASSERT_EQ(value(dirarg.value, 0), "directory.dir1");
// Test getFileExtension() function.
SEQAN_ASSERT_EQ(getFileExtension(dirarg), ".dir1");
// different case should also work
_assignArgumentValue(dirarg, "directory.DIR1");
SEQAN_ASSERT_EQ(value(dirarg.value, 0), "directory.DIR1");
// also accept a trailing '/'
_assignArgumentValue(dirarg, "directory.dir2/");
SEQAN_ASSERT_EQ(value(dirarg.value, 0), "directory.dir2/");
// Test getFileExtension() function.
SEQAN_ASSERT_EQ(getFileExtension(dirarg), ".dir2");
// different case should also work
_assignArgumentValue(dirarg, "directory.DIR2/");
SEQAN_ASSERT_EQ(value(dirarg.value, 0), "directory.DIR2/");
}
#endif // SEQAN_TESTS_ARG_PARSE_TEST_ARG_PARSE_ARGUMENT_H_
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