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// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2026, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
// ==========================================================================
#ifndef SEQAN_TESTS_BASIC_TEST_BASIC_TEST_BASIC_ALPHABET_PROFILE_H_
#define SEQAN_TESTS_BASIC_TEST_BASIC_TEST_BASIC_ALPHABET_PROFILE_H_
// --------------------------------------------------------------------------
// Check Concept Conformance
// --------------------------------------------------------------------------
// Not called, checked at compile time.
void testProfileCharConcepts()
{
using namespace seqan2;
SEQAN_CONCEPT_ASSERT((AlphabetConcept<ProfileChar<Dna> >));
SEQAN_CONCEPT_ASSERT((AlphabetConcept<ProfileChar<Dna5> >));
}
// --------------------------------------------------------------------------
// Check Metafunction and Function Implementation
// --------------------------------------------------------------------------
SEQAN_DEFINE_TEST(test_basic_alphabet_profile_metafunctions)
{
using namespace seqan2;
typedef ProfileChar<bool> TProfileChar;
// Metafunction BitsPerValue
SEQAN_ASSERT(+(SameType_<typename BitsPerValue<TProfileChar>::Type, unsigned>::VALUE));
SEQAN_ASSERT_EQ(+(BitsPerValue<TProfileChar>::VALUE), 96u);
// Metafunction ValueSize
SEQAN_ASSERT(+(SameType_<typename ValueSize<TProfileChar>::Type, unsigned>::VALUE));
SEQAN_ASSERT_EQ(+(ValueSize<TProfileChar>::VALUE), 3);
// Metafunction SourceValue
SEQAN_ASSERT(+(SameType_<typename SourceValue<TProfileChar>::Type, bool>::VALUE));
SEQAN_ASSERT(+(SameType_<typename SourceValue<TProfileChar const>::Type, bool>::VALUE));
}
SEQAN_DEFINE_TEST(test_basic_alphabet_profile_constructors)
{
using namespace seqan2;
typedef ProfileChar<Dna> TProfileChar;
// Test default constructor.
{
TProfileChar c;
SEQAN_ASSERT_EQ(c.count[0], 0u);
SEQAN_ASSERT_EQ(c.count[1], 0u);
SEQAN_ASSERT_EQ(c.count[2], 0u);
SEQAN_ASSERT_EQ(c.count[3], 0u);
}
// Test copy constructor.
{
TProfileChar c;
c.count[2] = 32;
TProfileChar d(c);
SEQAN_ASSERT_EQ(d.count[0], 0u);
SEQAN_ASSERT_EQ(d.count[1], 0u);
SEQAN_ASSERT_EQ(d.count[2], 32u);
SEQAN_ASSERT_EQ(d.count[3], 0u);
}
// Test construction from source value.
{
Dna d = 'C';
TProfileChar c(d);
SEQAN_ASSERT_EQ(c.count[0], 0u);
SEQAN_ASSERT_EQ(c.count[1], 1u);
SEQAN_ASSERT_EQ(c.count[2], 0u);
SEQAN_ASSERT_EQ(c.count[3], 0u);
}
}
SEQAN_DEFINE_TEST(test_basic_alphabet_profile_relations)
{
using namespace seqan2;
ProfileChar<Dna> c, d;
SEQAN_ASSERT(c == d);
SEQAN_ASSERT_NOT(c != d);
c.count[1] = 3;
SEQAN_ASSERT(c != d);
SEQAN_ASSERT_NOT(c == d);
d.count[1] = 3;
SEQAN_ASSERT(c == d);
SEQAN_ASSERT_NOT(c != d);
}
SEQAN_DEFINE_TEST(test_basic_alphabet_profile_empty)
{
using namespace seqan2;
ProfileChar<Dna> c;
SEQAN_ASSERT(empty(c));
c.count[0] = 3;
SEQAN_ASSERT_NOT(empty(c));
}
// TODO(holtgrew): Test assign(), convertImpl(), operator<<, conversions.
#endif // #ifndef SEQAN_TESTS_BASIC_TEST_BASIC_ALPHABET_PROFILE_H_
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