1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
## G: COMMENT: RNA was folded for 20 minutes at 37 C ANNOTATION: chemical:HEPES:100mM(pH8.0) chemical:MgCl2:10mM chemical:NACl:100mM temperature:37C experimentType:SHAPE-Seqv2.0 replicate:1
## S1: Name of first sequence
## S2: Name of second sequence
## S3: Name of third sequence
## F1: First fixed structure computed with a tool such as Ipknot, dotknot, RNAfold etc..
## F2: Second fixed structure computed with a tool such as Ipknot, dotknot, RNAfold etc..
## M1: First base pair probability matrix computed with a tool such RNAfold
## M2: Second base pair probability matrix computed with a tool such RNAfold
## T1: First type of biological validated data (SHAPE, DMS, CMCT).
## T2: Second type of biological validated data (SHAPE, DMS, CMCT).
# S1 T2
# I NT QU R2 RE2 F1 F2 M1 M2
1 A H 3.4552 1.1760 8 5 <5/0.003 | 8/0.87> <4/0.002 | 5/0.3 | 8/0.007>
2 G { 46.9128 13.8533 7 4 <5/0.03 | 7/0.4> <4/0.6 | 7/0.3>
3 U # 0.1740 0.2738 6 6 <6/0.5> <6/0.8>
4 C ! 0.0000 0.0000 0 2 <> <1/0.002 | 2/0.6>
5 C 7 0.0000 0.0000 0 1 <1/0.003 | 2/0.03> <1/0.3>
6 G T 0.0279 0.0161 3 3 <3/0.5> <3/0.8>
7 U @ 0.0997 0.0575 2 0 <2/0.4> <2/0.3>
8 C g 0.0000 0.0000 1 0 <1/0.87> <1/0.007>
# S2 T2
# I NT QU R2 RE2 F2 M1
1 A @ 3.4552 1.1760 8 <5/0.003 | 8/0.87>
2 G { 16.9128 1.8533 7 <5/0.03 | 7/0.4>
3 C # 0.1740 0.2738 6 <6/0.6>
4 C ! 0.0000 2.0220 0 <>
5 C & 0.4300 0.0110 0 <1/0.003 | 2/0.03>
6 A T 0.0279 0.0161 3 <3/0.6>
7 U @ 0.0997 0.0575 2 <2/0.4>
8 C 1 0.0000 0.0000 1 <1/0.87>
# S3 T1 T2
# I NT QU R1 RE1 R2 RE2 F1 M2
1 A ? 3.4552 1.1760 0.7127 0.0863 5 <4/0.002 | 5/0.3>
2 G ' 46.9128 13.8533 0.3916 0.1568 4 <4/0.6 | 7/0.3>
3 U 5 0.1740 0.2738 1.5855 0.2431 6 <6/0.8>
4 C ! 0.7700 2.4500 0.3236 0.6132 2 <1/0.002 | 2/0.6>
5 C @ 0.0000 0.0000 1.6117 0.0000 1 <1/0.3>
6 G \ 0.0279 0.0161 0.4674 0.0000 3 <3/0.8>
7 U @ 0.0997 0.0575 0.3222 3.9352 0 <2/0.3>
|
