1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
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#
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 120 substitution matrix, scale = ln(2)/2 = 0.346574
#
# Expected score = -1.64, Entropy = 0.979 bits
#
# Lowest score = -8, Highest score = 12
#
#
# added J-Column as (I+L)/2 and U == X
# reordered to be (alphabetically sorted; X *)
A B C D E F G H I J K L M N O P Q R S T U V W Y Z X *
A 3 0 -3 0 0 -4 1 -3 -1 -2 -2 -3 -2 -1 -1 1 -1 -3 1 1 -1 0 -7 -4 -1 -1 -8
B 0 4 -6 4 3 -5 0 1 -3 -4 0 -4 -4 3 -1 -2 0 -2 0 0 -1 -3 -6 -3 2 -1 -8
C -3 -6 9 -7 -7 -6 -4 -4 -3 -5 -7 -7 -6 -5 -4 -4 -7 -4 0 -3 -4 -3 -8 -1 -7 -4 -8
D 0 4 -7 5 3 -7 0 0 -3 -4 -1 -5 -4 2 -2 -3 1 -3 0 -1 -2 -3 -8 -5 3 -2 -8
E 0 3 -7 3 5 -7 -1 -1 -3 -4 -1 -4 -3 1 -1 -2 2 -3 -1 -2 -1 -3 -8 -5 4 -1 -8
F -4 -5 -6 -7 -7 8 -5 -3 0 0 -7 0 -1 -4 -3 -5 -6 -5 -3 -4 -3 -3 -1 4 -6 -3 -8
G 1 0 -4 0 -1 -5 5 -4 -4 -5 -3 -5 -4 0 -2 -2 -3 -4 1 -1 -2 -2 -8 -6 -2 -2 -8
H -3 1 -4 0 -1 -3 -4 7 -4 -4 -2 -3 -4 2 -2 -1 3 1 -2 -3 -2 -3 -3 -1 1 -2 -8
I -1 -3 -3 -3 -3 0 -4 -4 6 4 -3 1 1 -2 -1 -3 -3 -2 -2 0 -1 3 -6 -2 -3 -1 -8
J -2 -4 -5 -4 -4 0 -5 -4 4 4 -4 3 2 -3 -2 -3 -3 -3 -3 -2 -2 2 -5 -2 -3 -2 -8
K -2 0 -7 -1 -1 -7 -3 -2 -3 -4 5 -4 0 1 -2 -2 0 2 -1 -1 -2 -4 -5 -5 -1 -2 -8
L -3 -4 -7 -5 -4 0 -5 -3 1 3 -4 5 3 -4 -2 -3 -2 -4 -4 -3 -2 1 -3 -2 -3 -2 -8
M -2 -4 -6 -4 -3 -1 -4 -4 1 2 0 3 8 -3 -2 -3 -1 -1 -2 -1 -2 1 -6 -4 -2 -2 -8
N -1 3 -5 2 1 -4 0 2 -2 -3 1 -4 -3 4 -1 -2 0 -1 1 0 -1 -3 -4 -2 0 -1 -8
O -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2 -1 -5 -3 -1 -2 -8
P 1 -2 -4 -3 -2 -5 -2 -1 -3 -3 -2 -3 -3 -2 -2 6 0 -1 1 -1 -2 -2 -7 -6 -1 -2 -8
Q -1 0 -7 1 2 -6 -3 3 -3 -3 0 -2 -1 0 -1 0 6 1 -2 -2 -1 -3 -6 -5 4 -1 -8
R -3 -2 -4 -3 -3 -5 -4 1 -2 -3 2 -4 -1 -1 -2 -1 1 6 -1 -2 -2 -3 1 -5 -1 -2 -8
S 1 0 0 0 -1 -3 1 -2 -2 -3 -1 -4 -2 1 -1 1 -2 -1 3 2 -1 -2 -2 -3 -1 -1 -8
T 1 0 -3 -1 -2 -4 -1 -3 0 -2 -1 -3 -1 0 -1 -1 -2 -2 2 4 -1 0 -6 -3 -2 -1 -8
U -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2 -1 -5 -3 -1 -2 -8
V 0 -3 -3 -3 -3 -3 -2 -3 3 2 -4 1 1 -3 -1 -2 -3 -3 -2 0 -1 5 -8 -3 -3 -1 -8
W -7 -6 -8 -8 -8 -1 -8 -3 -6 -5 -5 -3 -6 -4 -5 -7 -6 1 -2 -6 -5 -8 12 -2 -7 -5 -8
Y -4 -3 -1 -5 -5 4 -6 -1 -2 -2 -5 -2 -4 -2 -3 -6 -5 -5 -3 -3 -3 -3 -2 8 -5 -3 -8
Z -1 2 -7 3 4 -6 -2 1 -3 -3 -1 -3 -2 0 -1 -1 4 -1 -1 -2 -1 -3 -7 -5 4 -1 -8
X -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2 -1 -5 -3 -1 -2 -8
* -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 1
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