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#include <utility>
#include <seqan3/alignment/pairwise/align_pairwise.hpp>
#include <seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp>
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/core/debug_stream.hpp>
using seqan3::operator""_dna4;
int main()
{
seqan3::dna4_vector s1 = "ACGTGAACTGACT"_dna4;
seqan3::dna4_vector s2 = "ACGAAGACCGAT"_dna4;
// Configure the alignment kernel.
auto config = seqan3::align_cfg::method_global{} |
seqan3::align_cfg::scoring_scheme{seqan3::nucleotide_scoring_scheme{}};
// Invoke the pairwise alignment which returns a lazy range over alignment results.
auto results = seqan3::align_pairwise(std::tie(s1, s2), config);
auto & res = *results.begin();
seqan3::debug_stream << "Score: " << res.score() << '\n';
}
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