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#include <utility>
#include <vector>
#include <seqan3/alignment/pairwise/align_pairwise.hpp>
#include <seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp>
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/core/debug_stream.hpp>
#include <seqan3/range/views/pairwise_combine.hpp>
#include <seqan3/std/ranges>
using seqan3::operator""_dna4;
int main()
{
std::vector vec{"ACGTGACTGACT"_dna4,
"ACGAAGACCGAT"_dna4,
"ACGTGACTGACT"_dna4,
"AGGTACGAGCGACACT"_dna4};
// Configure the alignment kernel.
auto config = seqan3::align_cfg::method_global{} |
seqan3::align_cfg::edit_scheme |
seqan3::align_cfg::min_score{-7} |
seqan3::align_cfg::output_score{};
auto filter_v = std::views::filter([](auto && res) { return res.score() >= -6;});
for (auto const & res : seqan3::align_pairwise(seqan3::views::pairwise_combine(vec), config) | seqan3::views::persist | filter_v)
{
seqan3::debug_stream << "Score: " << res.score() << '\n';
}
}
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