1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30
|
#include <iostream>
#include <vector>
#include <seqan3/std/ranges> // include all of the standard library's views
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/range/views/kmer_hash.hpp>
#include <seqan3/range/views/minimiser.hpp>
using seqan3::operator""_dna4;
int main()
{
std::vector<seqan3::dna4> text{"CCACGTCGACGGTT"_dna4};
{
//![minimiser]
//![def]
auto minimisers = text | seqan3::views::kmer_hash(seqan3::ungapped{4}) | seqan3::views::minimiser(5);
//![minimiser]
}
{
//![minimiser_seed]
//![def]
uint64_t const seed = 0x8F3F73B5CF1C9ADE;
auto minimisers = text | seqan3::views::kmer_hash(seqan3::ungapped{4})
| std::views::transform([seed] (uint64_t i)
{return i ^ seed;})
| seqan3::views::minimiser(5);
//![minimiser_seed]
}
}
|