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#include <vector>
#include <seqan3/alignment/configuration/all.hpp>
#include <seqan3/alignment/pairwise/align_pairwise.hpp>
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/core/debug_stream.hpp>
#include <seqan3/std/ranges>
int main()
{
using seqan3::operator""_dna4;
std::vector data1{"AGTGCTACG"_dna4, "AGTAGACTACG"_dna4, "AGTTACGAC"_dna4};
std::vector data2{"ACGTGCGACTAG"_dna4, "ACGTACGACACG"_dna4, "AGTAGCGATCG"_dna4};
// Configure the alignment kernel.
auto config = seqan3::align_cfg::method_global{} |
seqan3::align_cfg::scoring_scheme{seqan3::nucleotide_scoring_scheme{}};
// Compute the alignment over a range of pairs.
for (auto const & res : seqan3::align_pairwise(seqan3::views::zip(data1, data2), config))
seqan3::debug_stream << "The score: " << res.score() << "\n";
}
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