1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
|
// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
#include <gtest/gtest.h>
#include <type_traits>
#include <seqan3/alignment/configuration/align_config_output.hpp>
#include <seqan3/core/algorithm/configuration.hpp>
#include <seqan3/core/type_traits/basic.hpp>
#include "../../core/algorithm/pipeable_config_element_test_template.hpp"
template <typename test_t>
struct align_cfg_output_test : public ::testing::Test
{};
using test_types = ::testing::Types<seqan3::align_cfg::output_score,
seqan3::align_cfg::output_end_position,
seqan3::align_cfg::output_begin_position,
seqan3::align_cfg::output_alignment,
seqan3::align_cfg::output_sequence1_id,
seqan3::align_cfg::output_sequence2_id>;
INSTANTIATE_TYPED_TEST_SUITE_P(output, pipeable_config_element_test, test_types, );
TEST(align_config_output, score)
{
EXPECT_TRUE((std::same_as<std::remove_cvref_t<decltype(seqan3::align_cfg::output_score{})>,
seqan3::align_cfg::output_score>));
}
TEST(align_config_output, end_position)
{
EXPECT_TRUE((std::same_as<std::remove_cvref_t<decltype(seqan3::align_cfg::output_end_position{})>,
seqan3::align_cfg::output_end_position>));
}
TEST(align_config_output, begin_position)
{
EXPECT_TRUE((std::same_as<std::remove_cvref_t<decltype(seqan3::align_cfg::output_begin_position{})>,
seqan3::align_cfg::output_begin_position>));
}
TEST(align_config_output, alignment)
{
EXPECT_TRUE((std::same_as<std::remove_cvref_t<decltype(seqan3::align_cfg::output_alignment{})>,
seqan3::align_cfg::output_alignment>));
}
TEST(align_config_output, sequence1_id)
{
EXPECT_TRUE((std::same_as<std::remove_cvref_t<decltype(seqan3::align_cfg::output_sequence1_id{})>,
seqan3::align_cfg::output_sequence1_id>));
}
TEST(align_config_output, sequence2_id)
{
EXPECT_TRUE((std::same_as<std::remove_cvref_t<decltype(seqan3::align_cfg::output_sequence2_id{})>,
seqan3::align_cfg::output_sequence2_id>));
}
TEST(align_config_output, combine_outputs)
{
seqan3::configuration cfg = seqan3::align_cfg::output_score{} |
seqan3::align_cfg::output_end_position{} |
seqan3::align_cfg::output_begin_position{} |
seqan3::align_cfg::output_alignment{} |
seqan3::align_cfg::output_sequence1_id{} |
seqan3::align_cfg::output_sequence2_id{};
EXPECT_TRUE(cfg.exists<seqan3::align_cfg::output_score>());
EXPECT_TRUE(cfg.exists<seqan3::align_cfg::output_end_position>());
EXPECT_TRUE(cfg.exists<seqan3::align_cfg::output_begin_position>());
EXPECT_TRUE(cfg.exists<seqan3::align_cfg::output_alignment>());
EXPECT_TRUE(cfg.exists<seqan3::align_cfg::output_sequence1_id>());
EXPECT_TRUE(cfg.exists<seqan3::align_cfg::output_sequence2_id>());
}
|
